FoldMark: Protecting Protein Generative Models with Watermarking
Fuente:
arXiv
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| Main Authors: | Zhang, Zaixi, Jin, Ruofan, Fu, Kaidi, Cong, Le, Zitnik, Marinka, Wang, Mengdi |
|---|---|
| Format: | Preprint |
| Published: |
2024
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| Subjects: | |
| Online Access: | |
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