Imagen de Portada

Popping Bubbles in Pangenome Graphs

Fuente: arXiv

Guardado en:

Detalles Bibliográficos
Autores principales:	Mwaniki, Njagi, Garrison, Erik, Pisanti, Nadia
Formato:	Preprint
Publicado:	2024
Materias:	Data Structures and Algorithms Genomics
Acceso en línea:	Acceder al recurso
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

Ejemplares similares

Elastic-Degenerate String Comparison
por: Gabory, Esteban, et al.
Publicado: (2024)

A Graph-based Approach to Variant Extraction from Sequences
por: Santcroos, Mark A., et al.
Publicado: (2025)

Hecate: A Modular Genomic Compressor
por: Szewczyk, Kamila, et al.
Publicado: (2026)

Multiple Genome Analytics Framework: The Case of All SARS-CoV-2 Complete Variants
por: Xylogiannopoulos, Konstantinos
Publicado: (2022)

Fast Iteration of Spaced k-mers
por: Czech, Lucas
Publicado: (2026)

The TAG array of a multiple sequence alignment
por: Olbrich, Jannik, et al.
Publicado: (2025)

Fast and Flexible Flow Decompositions in General Graphs via Dominators
por: Sena, Francisco, et al.
Publicado: (2025)

Safe Sequences via Dominators in DAGs for Path-Covering Problems
por: Sena, Francisco, et al.
Publicado: (2024)

Taxonomic classification with maximal exact matches in KATKA kernels and minimizer digests
por: Draesslerová, Dominika, et al.
Publicado: (2024)

Genome-on-Diet: Taming Large-Scale Genomic Analyses via Sparsified Genomics
por: Alser, Mohammed, et al.
Publicado: (2022)

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies
por: Kong, Yong
Publicado: (2014)

A Linear Time Quantum Algorithm for Pairwise Sequence Alignment
por: Khan, Md. Rabiul Islam, et al.
Publicado: (2023)

Enabling Fast, Accurate, and Efficient Real-Time Genome Analysis via New Algorithms and Techniques
por: Firtina, Can
Publicado: (2025)

Rapid GPU-Based Pangenome Graph Layout
por: Li, Jiajie, et al.
Publicado: (2024)

BWT for string collections
por: Cenzato, Davide, et al.
Publicado: (2025)

An Allele-Centric Pan-Graph-Matrix Representation for Scalable Pangenome Analysis
por: Garrone, Roberto
Publicado: (2025)

Pattern Masking for Dictionary Matching
por: Charalampopoulos, Panagiotis, et al.
Publicado: (2020)

Indexing Strings with Utilities
por: Bernardini, Giulia, et al.
Publicado: (2025)

Sparse Navigable Graphs for Nearest Neighbor Search: Algorithms and Hardness
por: Khanna, Sanjeev, et al.
Publicado: (2025)

Bubble-Flip -- A New Generation Algorithm for Prefix Normal Words
por: Cicalese, Ferdinando, et al.
Publicado: (2017)

Space-Efficient Parameterized Algorithms on Graphs of Low Shrubdepth
por: Bergougnoux, Benjamin, et al.
Publicado: (2023)

Graph-based method for constructing consensus trees
por: Torquet, Elio, et al.
Publicado: (2025)

Efficient $d$-ary Cuckoo Hashing at High Load Factors by Bubbling Up
por: Kuszmaul, William, et al.
Publicado: (2025)

Streaming and Massively Parallel Algorithms for Euclidean Max-Cut
por: Menand, Nicolas, et al.
Publicado: (2025)

Online Graph Embedding in Star Graphs
por: Dallot, Julien, et al.
Publicado: (2026)

Temporal Graph Reconfiguration for Always-Connected Graphs
por: Sievers, Paul, et al.
Publicado: (2025)

Data-Dependent LSH for the Earth Mover's Distance
por: Jayaram, Rajesh, et al.
Publicado: (2024)

A Quasi-Monte Carlo Data Structure for Smooth Kernel Evaluations
por: Charikar, Moses, et al.
Publicado: (2024)

Pop Stacks with a Bypass
por: Cioni, Lapo, et al.
Publicado: (2024)

Embedding Planar Graphs into Graphs of Treewidth $O(\log^{3} n)$
por: Chang, Hsien-Chih, et al.
Publicado: (2024)

Bandwidth vs BFS Width in Matrix Reordering, Graph Reconstruction, and Graph Drawing
por: Eppstein, David, et al.
Publicado: (2025)

On the Approximability of Max-Cut on 3-Colorable Graphs and Graphs with Large Independent Sets
por: Ghoshal, Suprovat, et al.
Publicado: (2026)

Algebraic Vertex Ordering of a Sparse Graph for Adjacency Access Locality and Graph Compression
por: Floros, Dimitris, et al.
Publicado: (2024)

Graph Partitioning With Limited Moves
por: Behbahani, Majid, et al.
Publicado: (2024)

Enhanced Graph Pattern Matching
por: Cotumaccio, Nicola
Publicado: (2024)

Faster Algorithms for Graph Monopolarity
por: Philip, Geevarghese, et al.
Publicado: (2024)

Individual Fairness in Graph Decomposition
por: Munagala, Kamesh, et al.
Publicado: (2024)

The Case for External Graph Sketching
por: Bender, Michael A., et al.
Publicado: (2025)

Fast In-Spectrum Graph Watermarks
por: Bourrée, Jade Garcia, et al.
Publicado: (2025)

Biclique Reconfiguration in Bipartite Graphs
por: Otachi, Yota, et al.
Publicado: (2026)