Cover Image

TRENDY: Gene Regulatory Network Inference Enhanced by Transformer

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Tian, Xueying, Patel, Yash, Wang, Yue
Format:	Preprint
Published:	2024
Subjects:	Molecular Networks
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

QWENDY: Gene Regulatory Network Inference by Quadruple Covariance Matrices
by: Wang, Yue, et al.
Published: (2025)

WENDY: Covariance Dynamics Based Gene Regulatory Network Inference
by: Wang, Yue, et al.
Published: (2024)

Machine Learning Methods for Gene Regulatory Network Inference
by: Hegde, Akshata, et al.
Published: (2025)

KINDLE: Knowledge-Guided Distillation for Prior-Free Gene Regulatory Network Inference
by: Peng, Rui, et al.
Published: (2025)

Tensor Network based Gene Regulatory Network Inference for Single-Cell Transcriptomic Data
by: Larrarte, Olatz Sanz, et al.
Published: (2025)

A Novel Graph Transformer Framework for Gene Regulatory Network Inference
by: Teji, Binon, et al.
Published: (2025)

Modeling Dynamics, Cell Type Specificity, and Perturbations in Gene Regulatory Networks
by: Shin, Junha, et al.
Published: (2026)

Gene Regulatory Network Inference in the Presence of Dropouts: a Causal View
by: Dai, Haoyue, et al.
Published: (2024)

Counting Subnetworks Under Gene Duplication in Genetic Regulatory Networks
by: Scruse, Ashley, et al.
Published: (2024)

On Networks and their Applications: Stability of Gene Regulatory Networks and Gene Function Prediction using Autoencoders
by: Coban, Hamza
Published: (2024)

On Hybrid Gene Regulatory Networks
by: Wurm, Adrian, et al.
Published: (2024)

Biological Regulatory Network Inference through Circular Causal Structure Learning
by: Jiang, Hongyang, et al.
Published: (2025)

GRiNS: A Python Library for Simulating Gene Regulatory Network Dynamics
by: Harlapur, Pradyumna, et al.
Published: (2025)

Predictive-Switching Control of Stochastic Gene Regulatory Networks: A Contractive PIDE Framework
by: Fernández, Christian, et al.
Published: (2026)

Quantifying Ranking Instability Across Evaluation Protocol Axes in Gene Regulatory Network Benchmarking
by: Kendiukhov, Ihor
Published: (2026)

Markovian Promoter Models: A Mechanistic Alternative to Hill Functions in Gene Regulatory Networks
by: Wu, Tianyu
Published: (2025)

Logistic Gene Regulatory Networks: Prevention of Expression Shutdown, and Numerical Stability Beyond Hill Function
by: Belgacem, Ismail
Published: (2026)

Corrected Hill Function in Stochastic Gene Regulatory Networks
by: Hernández-García, Manuel Eduardo, et al.
Published: (2023)

Oscillation Criteria in Large-Scale Gene Regulatory Networks with Intrinsic Fluctuations
by: Hernández-García, Manuel Eduardo, et al.
Published: (2026)

DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks
by: Shutta, Katherine H., et al.
Published: (2021)

A Novel Quantum Algorithm for Efficient Attractor Search in Gene Regulatory Networks
by: Rossini, Mirko, et al.
Published: (2024)

Identifying the Attractors of Gene Regulatory Networks from Expression Data under Uncertainty: An Interpretable Approach
by: Rowhanimanesh, Alireza
Published: (2024)

Evolving Diploid Boolean and Multi-Valued Gene Networks
by: Bull, Larry
Published: (2023)

A Gene Ranking Framework Enhances the Design Efficiency of Genome-Scale Constraint-Based Metabolic Networks under Time Limits
by: Ma, Yier, et al.
Published: (2025)

Accelerating Machine Learning Systems via Category Theory: Applications to Spherical Attention for Gene Regulatory Networks
by: Abbott, Vincent, et al.
Published: (2025)

Stress-induced Eukaryotic Translational Regulatory Mechanisms
by: Mir, Dilawar Ahmad, et al.
Published: (2024)

Optimal Inference of Asynchronous Boolean Network Models
by: Karlebach, Guy
Published: (2025)

Determining the Equivalence of Small Zero-one Reaction Networks
by: Jiao, Yue, et al.
Published: (2025)

The Environment-Dependent Regulatory Landscape of the E. coli Genome
by: Röschinger, Tom, et al.
Published: (2025)

Irreversibility in Bacterial Regulatory Networks
by: Zhao, Yi, et al.
Published: (2024)

GPU-accelerated Modeling of Biological Regulatory Networks
by: Reimer, Joyce, et al.
Published: (2025)

Lomics: Generation of Pathways and Gene Sets using Large Language Models for Transcriptomic Analysis
by: Wong, Chun-Ka, et al.
Published: (2024)

Identifying Key Genes in Cancer Networks Using Persistent Homology
by: Ramos, Rodrigo Henrique, et al.
Published: (2024)

Network Pharmacology Reveals HSPA1A/BST2 as Potential Targets of Ci Bai Capsule's Active Compounds Intervening in Leukopenia
by: Zhang, Dingfan, et al.
Published: (2025)

FluxGAT: Integrating Flux Sampling with Graph Neural Networks for Unbiased Gene Essentiality Classification
by: Sharma, Kieren, et al.
Published: (2024)

Automated Inference of Graph Transformation Rules
by: Andersen, Jakob L., et al.
Published: (2024)

A Topology-Based Machine Learning Model Decisively Outperforms Flux Balance Analysis in Predicting Metabolic Gene Essentiality
by: Boone, Justin
Published: (2025)

Time-Varying Network Driver Estimation (TNDE) Quantifies Stage-Specific Regulatory Effects From Single-Cell Snapshots
by: Li, Jiaxin, et al.
Published: (2025)

Quantum-Enhanced Classification of Brain Tumors Using DNA Microarray Gene Expression Profiles
by: Akpinar, Emine, et al.
Published: (2025)

drGT: Attention-Guided Gene Assessment of Drug Response Utilizing a Drug-Cell-Gene Heterogeneous Network
by: Inoue, Yoshitaka, et al.
Published: (2024)