Pre-trained Molecular Language Models with Random Functional Group Masking
Fuente:
arXiv
Guardado en:
| Autores principales: | Peng, Tianhao, Li, Yuchen, Li, Xuhong, Bian, Jiang, Xie, Zeke, Sui, Ning, Mumtaz, Shahid, Xu, Yanwu, Kong, Linghe, Xiong, Haoyi |
|---|---|
| Formato: | Preprint |
| Publicado: |
2024
|
| Materias: | |
| Acceso en línea: | |
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