Cover Image

LA4SR: illuminating the dark proteome with generative AI

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Nelson, David R., Jaiswal, Ashish Kumar, Ismail, Noha, Mystikou, Alexandra, Salehi-Ashtiani, Kourosh
Format:	Preprint
Published:	2024
Subjects:	Genomics Artificial Intelligence Computation and Language Quantitative Methods
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Sweetwater: An interpretable and adaptive autoencoder for efficient tissue deconvolution
by: de la Fuente, Jesus, et al.
Published: (2023)

pHapCompass: Probabilistic Assembly and Uncertainty Quantification of Polyploid Haplotype Phase
by: Hosseini, Marjan, et al.
Published: (2025)

Fine-tuning the ESM2 protein language model to understand the functional impact of missense variants
by: Saadat, Ali, et al.
Published: (2024)

MotifbreakR v2: extended capability and database integration
by: Coetzee, Simon G., et al.
Published: (2024)

DNA Language Model and Interpretable Graph Neural Network Identify Genes and Pathways Involved in Rare Diseases
by: Saadat, Ali, et al.
Published: (2024)

Methylation Operation Wizard (MeOW): Identification of differentially methylated regions in long-read sequencing data
by: Zalusky, Miranda PG, et al.
Published: (2024)

Deciphering regulatory architectures from synthetic single-cell expression patterns
by: Pan, Rosalind Wenshan, et al.
Published: (2024)

Objectively Evaluating the Reliability of Cell Type Annotation Using LLM-Based Strategies
by: Ye, Wenjin, et al.
Published: (2024)

Proteome-wide prediction of mode of inheritance and molecular mechanism underlying genetic diseases using structural interactomics
by: Saadat, Ali, et al.
Published: (2024)

RawHash2: Mapping Raw Nanopore Signals Using Hash-Based Seeding and Adaptive Quantization
by: Firtina, Can, et al.
Published: (2023)

RawAlign: Accurate, Fast, and Scalable Raw Nanopore Signal Mapping via Combining Seeding and Alignment
by: Lindegger, Joël, et al.
Published: (2023)

DiMA: Sequence Diversity Dynamics Analyser for Viruses
by: Tharanga, Shan, et al.
Published: (2022)

CIBRA identifies genomic alterations with a system-wide impact on tumor biology
by: Lakbir, Soufyan, et al.
Published: (2024)

CEP-IP: An Explainable Framework for Cell Subpopulation Identification in Single-cell Transcriptomics
by: Wong, Kah Keng
Published: (2025)

A CNN Approach to Polygenic Risk Prediction of Kidney Stone Formation
by: Salem, Amr, et al.
Published: (2024)

Lightning-fast adaptive immune receptor similarity search by symmetric deletion lookup
by: Chotisorayuth, Touchchai, et al.
Published: (2024)

Harnessing the Potential of Spatial Statistics for Spatial Omics Data with pasta
by: Emons, Martin, et al.
Published: (2024)

Viral Dark Matter: Illuminating Protein Function, Ecology, and Biotechnological Promises
by: Kosmopoulos, James C., et al.
Published: (2025)

SpikGPT: A High-Accuracy and Interpretable Spiking Attention Framework for Single-Cell Annotation
by: Huang, Min, et al.
Published: (2025)

Refined HLA Linkage Disequilibrium Architectures of World Populations by a Novel Allelic Correlation Measure
by: Zhang, Fei, et al.
Published: (2025)

Single-Cell Proteomics Using Mass Spectrometry
by: Momenzadeh, Amanda, et al.
Published: (2025)

Phospho-Proteomics Method Optimization and Application to Stimulated Jurkat Cells
by: Ndungu, Teresia, et al.
Published: (2025)

Microbial and Viral Ecology Analysis for Metagenomic Data
by: Kosmopoulos, James C., et al.
Published: (2024)

RawBench: A Comprehensive Benchmarking Framework for Raw Nanopore Signal Analysis Techniques
by: Eris, Furkan, et al.
Published: (2025)

A Bayesian approach to model uncertainty in single-cell genomic data
by: Ren, Shanshan, et al.
Published: (2025)

Pathway Tools version 28.0: Integrated Software for Pathway/Genome Informatics and Systems Biology
by: Karp, Peter D., et al.
Published: (2015)

From Mutation to Degradation: Predicting Nonsense-Mediated Decay with NMDEP
by: Saadat, Ali, et al.
Published: (2025)

StateXDiff: Cell State-Contextualized Multimodal Diffusion for Single-Cell Perturbation Prediction
by: Shi, Peiting, et al.
Published: (2026)

MetaCompass: Reference-guided Assembly of Metagenomes
by: Luan, Tu, et al.
Published: (2024)

A comprehensive comparison of tools for fitting mutational signatures
by: Medo, Matúš, et al.
Published: (2023)

Can Large Language Models Replace Data Scientists in Biomedical Research?
by: Wang, Zifeng, et al.
Published: (2024)

Integrating Chain-of-Thought and Retrieval Augmented Generation Enhances Rare Disease Diagnosis from Clinical Notes
by: Wang, Zhanliang, et al.
Published: (2025)

Gene Set Summarization using Large Language Models
by: Joachimiak, Marcin P., et al.
Published: (2023)

scDiffusion: conditional generation of high-quality single-cell data using diffusion model
by: Luo, Erpai, et al.
Published: (2024)

Lingshu-Cell: A generative cellular world model for transcriptome modeling toward virtual cells
by: Zhang, Han, et al.
Published: (2026)

MARADONER: Motif Activity Response Analysis Done Right
by: Meshcheryakov, Georgy, et al.
Published: (2026)

The Multivariate SEM-PGS Model: Using Polygenic Scores to Investigate Cross-Trait Genetic Nurture and Assortative Mating
by: Lyu, Xuanyu, et al.
Published: (2025)

Multimodal Spatial Omics: From Data Acquisition to Computational Integration
by: Isik, Esra Busra, et al.
Published: (2026)

Double trouble: Predicting new variant counts across two heterogeneous populations
by: Shen, Yunyi, et al.
Published: (2024)

High nucleotide skew palindromic DNA sequences function as replication origins due to their unzipping propensity
by: Sahu, Parthasarathi, et al.
Published: (2024)