Targeted Maximum Likelihood Estimation for Integral Projection Models in Population Ecology
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arXiv
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| Natura: | Preprint |
| Pubblicazione: |
2024
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| _version_ | 1866915016570044416 |
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| author | Zhou, Yunzhe Hooker, Giles |
| author_facet | Zhou, Yunzhe Hooker, Giles |
| contents | Integral projection models (IPMs) are widely used to study population growth and the dynamics of demographic structure (e.g. age and size distributions) within a population.These models use data on individuals' growth, survival, and reproduction to predict changes in the population from one time point to the next and use these in turn to ask about long-term growth rates, the sensitivity of that growth rate to environmental factors, and aspects of the long term population such as how much reproduction concentrates in a few individuals; these quantities are not directly measurable from data and must be inferred from the model. Building IPMs requires us to develop models for individual fates over the next time step -- Did they survive? How much did they grow or shrink? Did they Reproduce? -- conditional on their initial state as well as on environmental covariates in a manner that accounts for the unobservable quantities that are are ultimately interested in estimating.Targeted maximum likelihood estimation (TMLE) methods are particularly well-suited to a framework in which we are largely interested in the consequences of models. These build machine learning-based models that estimate the probability distribution of the data we observe and define a target of inference as a function of these. The initial estimate for the distribution is then modified by tilting in the direction of the efficient influence function to both de-bias the parameter estimate and provide more accurate inference. In this paper, we employ TMLE to develop robust and efficient estimators for properties derived from a fitted IPM. Mathematically, we derive the efficient influence function and formulate the paths for the least favorable sub-models. Empirically, we conduct extensive simulations using real data from both long term studies of Idaho steppe plant communities and experimental Rotifer populations. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2411_08150 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Targeted Maximum Likelihood Estimation for Integral Projection Models in Population Ecology Zhou, Yunzhe Hooker, Giles Methodology Applications Machine Learning Integral projection models (IPMs) are widely used to study population growth and the dynamics of demographic structure (e.g. age and size distributions) within a population.These models use data on individuals' growth, survival, and reproduction to predict changes in the population from one time point to the next and use these in turn to ask about long-term growth rates, the sensitivity of that growth rate to environmental factors, and aspects of the long term population such as how much reproduction concentrates in a few individuals; these quantities are not directly measurable from data and must be inferred from the model. Building IPMs requires us to develop models for individual fates over the next time step -- Did they survive? How much did they grow or shrink? Did they Reproduce? -- conditional on their initial state as well as on environmental covariates in a manner that accounts for the unobservable quantities that are are ultimately interested in estimating.Targeted maximum likelihood estimation (TMLE) methods are particularly well-suited to a framework in which we are largely interested in the consequences of models. These build machine learning-based models that estimate the probability distribution of the data we observe and define a target of inference as a function of these. The initial estimate for the distribution is then modified by tilting in the direction of the efficient influence function to both de-bias the parameter estimate and provide more accurate inference. In this paper, we employ TMLE to develop robust and efficient estimators for properties derived from a fitted IPM. Mathematically, we derive the efficient influence function and formulate the paths for the least favorable sub-models. Empirically, we conduct extensive simulations using real data from both long term studies of Idaho steppe plant communities and experimental Rotifer populations. |
| title | Targeted Maximum Likelihood Estimation for Integral Projection Models in Population Ecology |
| topic | Methodology Applications Machine Learning |
| url | https://arxiv.org/abs/2411.08150 |