Persistent Homology Reveals the Role of Stiffness in Forming Topological Glasses in Dense Solutions of Ring Polymers
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arXiv
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| Autores principales: | , , , , |
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| Formato: | Preprint |
| Publicado: |
2024
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| _version_ | 1866916485686886400 |
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| author | Goto, Shota Nakamura, Takenobu Michieletto, Davide Kim, Kang Matubayasi, Nobuyuki |
| author_facet | Goto, Shota Nakamura, Takenobu Michieletto, Davide Kim, Kang Matubayasi, Nobuyuki |
| contents | Ring polymers are characterized by topology-specific entanglements called threadings. In the limit of large rings, it is conjectured that a "topological glass" should emerge due to the proliferation of threadings. In this study, we used persistent homology to quantify threading structures of ring polymers with different chain stiffness and elucidate mechanisms behind topological glasses. Using coordination data from coarse-grained molecular dynamics simulations, we analyzed the topology of the union of virtual spheres centered on each monomer or center of mass. As the radius of each sphere increases, the corresponding points connect, giving rise to topological entities such as edges, loops, and facets. We then analyzed how the number of loops per ring chain and penetrated loops varies with sphere radius, focusing on the effects of chain stiffness and density. The results reveal that loops are larger in stiff ring chains, whereas flexible ring chains do not generate sufficiently large loops to establish a threading structure. The stiffness of ring polymer plays a significant role in the formation of topological glasses in ring polymers. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2411_10970 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Persistent Homology Reveals the Role of Stiffness in Forming Topological Glasses in Dense Solutions of Ring Polymers Goto, Shota Nakamura, Takenobu Michieletto, Davide Kim, Kang Matubayasi, Nobuyuki Soft Condensed Matter Ring polymers are characterized by topology-specific entanglements called threadings. In the limit of large rings, it is conjectured that a "topological glass" should emerge due to the proliferation of threadings. In this study, we used persistent homology to quantify threading structures of ring polymers with different chain stiffness and elucidate mechanisms behind topological glasses. Using coordination data from coarse-grained molecular dynamics simulations, we analyzed the topology of the union of virtual spheres centered on each monomer or center of mass. As the radius of each sphere increases, the corresponding points connect, giving rise to topological entities such as edges, loops, and facets. We then analyzed how the number of loops per ring chain and penetrated loops varies with sphere radius, focusing on the effects of chain stiffness and density. The results reveal that loops are larger in stiff ring chains, whereas flexible ring chains do not generate sufficiently large loops to establish a threading structure. The stiffness of ring polymer plays a significant role in the formation of topological glasses in ring polymers. |
| title | Persistent Homology Reveals the Role of Stiffness in Forming Topological Glasses in Dense Solutions of Ring Polymers |
| topic | Soft Condensed Matter |
| url | https://arxiv.org/abs/2411.10970 |