A Modular Open Source Framework for Genomic Variant Calling
Fuente:
arXiv
Saved in:
| Main Authors: | Bisoi, Ankita Vaishnobi, V, Shreyas, Siguenza, Jose, Ramsundar, Bharath |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
AgriVariant: Variant Effect Prediction using DeepChem-Variant for Precision Breeding in Rice
by: Bisoi, Ankita Vaishnobi, et al.
Published: (2026)
by: Bisoi, Ankita Vaishnobi, et al.
Published: (2026)
Open Source Infrastructure for Automatic Cell Segmentation
by: Menezes, Aaron Rock, et al.
Published: (2024)
by: Menezes, Aaron Rock, et al.
Published: (2024)
Protect$^*$: Steerable Retrosynthesis through Neuro-Symbolic State Encoding
by: Sathyanarayana, Shreyas Vinaya, et al.
Published: (2026)
by: Sathyanarayana, Shreyas Vinaya, et al.
Published: (2026)
Deepmechanics
by: Shinde, Abhay, et al.
Published: (2026)
by: Shinde, Abhay, et al.
Published: (2026)
Open-Source Molecular Processing Pipeline for Generating Molecules
by: Shreyas, V, et al.
Published: (2024)
by: Shreyas, V, et al.
Published: (2024)
DeepChem Equivariant: SE(3)-Equivariant Support in an Open-Source Molecular Machine Learning Library
by: Siguenza, Jose, et al.
Published: (2025)
by: Siguenza, Jose, et al.
Published: (2025)
An Open-Source, Open Data Approach to Activity Classification from Triaxial Accelerometry in an Ambulatory Setting
by: Nikookar, Sepideh, et al.
Published: (2026)
by: Nikookar, Sepideh, et al.
Published: (2026)
DeepRetro: Retrosynthetic Pathway Discovery using Iterative LLM Reasoning
by: Sathyanarayana, Shreyas Vinaya, et al.
Published: (2025)
by: Sathyanarayana, Shreyas Vinaya, et al.
Published: (2025)
Efficient Data Selection for Training Genomic Perturbation Models
by: Panagopoulos, George, et al.
Published: (2025)
by: Panagopoulos, George, et al.
Published: (2025)
Global Interpretability via Automated Preprocessing: A Framework Inspired by Psychiatric Questionnaires
by: Strobl, Eric V.
Published: (2026)
by: Strobl, Eric V.
Published: (2026)
ViroBench: Benchmarking Nucleotide Foundation Models on Viral Genomics Tasks
by: Ye, Dongxin, et al.
Published: (2026)
by: Ye, Dongxin, et al.
Published: (2026)
Prostate-VarBench: A Benchmark with Interpretable TabNet Framework for Prostate Cancer Variant Classification
by: Tavara, Abraham Francisco Arellano, et al.
Published: (2025)
by: Tavara, Abraham Francisco Arellano, et al.
Published: (2025)
Learning Genomic Structure from $k$-mers
by: Thor, Filip, et al.
Published: (2025)
by: Thor, Filip, et al.
Published: (2025)
GraphGDel: Constructing and Learning Graph Representations of Genome-Scale Metabolic Models for Growth-Coupled Gene Deletion Prediction
by: Yang, Ziwei, et al.
Published: (2025)
by: Yang, Ziwei, et al.
Published: (2025)
Enhancing End Stage Renal Disease Outcome Prediction: A Multi-Sourced Data-Driven Approach
by: Li, Yubo, et al.
Published: (2024)
by: Li, Yubo, et al.
Published: (2024)
A Causal Framework for Precision Rehabilitation
by: Cotton, R. James, et al.
Published: (2024)
by: Cotton, R. James, et al.
Published: (2024)
SeFEF: A Seizure Forecasting Evaluation Framework
by: Carmo, Ana Sofia, et al.
Published: (2025)
by: Carmo, Ana Sofia, et al.
Published: (2025)
A Graph-in-Graph Learning Framework for Drug-Target Interaction Prediction
by: Song, Yuehua, et al.
Published: (2025)
by: Song, Yuehua, et al.
Published: (2025)
Explainable Deep Learning Framework for SERS Bio-quantification
by: Zaki, Jihan K., et al.
Published: (2024)
by: Zaki, Jihan K., et al.
Published: (2024)
A Stage-Aware Mixture of Experts Framework for Neurodegenerative Disease Progression Modelling
by: He, Tiantian, et al.
Published: (2025)
by: He, Tiantian, et al.
Published: (2025)
SGAC: A Graph Neural Network Framework for Imbalanced and Structure-Aware AMP Classification
by: Wang, Yingxu, et al.
Published: (2024)
by: Wang, Yingxu, et al.
Published: (2024)
Q-MRS: A Deep Learning Framework for Quantitative Magnetic Resonance Spectra Analysis
by: Wu, Christopher J., et al.
Published: (2024)
by: Wu, Christopher J., et al.
Published: (2024)
Prot2Token: A Unified Framework for Protein Modeling via Next-Token Prediction
by: Pourmirzaei, Mahdi, et al.
Published: (2025)
by: Pourmirzaei, Mahdi, et al.
Published: (2025)
A Framework for Feature Discovery in Intracranial Pressure Monitoring Data Using Neural Network Attention
by: Socha, Jonathan D., et al.
Published: (2026)
by: Socha, Jonathan D., et al.
Published: (2026)
A Symbolic and Statistical Learning Framework to Discover Bioprocessing Regulatory Mechanism: Cell Culture Example
by: Choy, Keilung, et al.
Published: (2025)
by: Choy, Keilung, et al.
Published: (2025)
Integrating Dynamical Systems Learning with Foundational Models: A Meta-Evolutionary AI Framework for Clinical Trials
by: Geraci, Joseph, et al.
Published: (2025)
by: Geraci, Joseph, et al.
Published: (2025)
Integrating Genomics into Multimodal EHR Foundation Models
by: Amar, Jonathan, et al.
Published: (2025)
by: Amar, Jonathan, et al.
Published: (2025)
A Real-Time Digital Twin for Type 1 Diabetes using Simulation-Based Inference
by: Hoang, Trung-Dung, et al.
Published: (2025)
by: Hoang, Trung-Dung, et al.
Published: (2025)
A Systematic Review on the Generative AI Applications in Human Medical Genomics
by: Changalidis, Anton, et al.
Published: (2025)
by: Changalidis, Anton, et al.
Published: (2025)
Deep Learning Framework for RNA Inverse Folding with Geometric Structure Potentials
by: Yao, Annabelle
Published: (2025)
by: Yao, Annabelle
Published: (2025)
Geneverse: A collection of Open-source Multimodal Large Language Models for Genomic and Proteomic Research
by: Liu, Tianyu, et al.
Published: (2024)
by: Liu, Tianyu, et al.
Published: (2024)
Towards AI-Based Precision Oncology: A Machine Learning Framework for Personalized Counterfactual Treatment Suggestions based on Multi-Omics Data
by: Schürch, Manuel, et al.
Published: (2024)
by: Schürch, Manuel, et al.
Published: (2024)
Learning Causally Predictable Outcomes from Psychiatric Longitudinal Data
by: Strobl, Eric V.
Published: (2025)
by: Strobl, Eric V.
Published: (2025)
GastroDL-Fusion: A Dual-Modal Deep Learning Framework Integrating Protein-Ligand Complexes and Gene Sequences for Gastrointestinal Disease Drug Discovery
by: Gao, Ziyang, et al.
Published: (2025)
by: Gao, Ziyang, et al.
Published: (2025)
Modeling methodology for the accurate and prompt prediction of symptomatic events in chronic diseases
by: Pagán, Josué, et al.
Published: (2024)
by: Pagán, Josué, et al.
Published: (2024)
KinDEL: DNA-Encoded Library Dataset for Kinase Inhibitors
by: Chen, Benson, et al.
Published: (2024)
by: Chen, Benson, et al.
Published: (2024)
GBDTSVM: Combined Support Vector Machine and Gradient Boosting Decision Tree Framework for efficient snoRNA-disease association prediction
by: Muna, Ummay Maria, et al.
Published: (2025)
by: Muna, Ummay Maria, et al.
Published: (2025)
MicroFuse: Protein-to-Genome Expert Fusion for Microbial Operon Reasoning
by: Cho, Seungik
Published: (2026)
by: Cho, Seungik
Published: (2026)
Omics-driven hybrid dynamic modeling of bioprocesses with uncertainty estimation
by: Espinel-Ríos, Sebastián, et al.
Published: (2024)
by: Espinel-Ríos, Sebastián, et al.
Published: (2024)
Biosecurity-Aware AI: Agentic Risk Auditing of Soft Prompt Attacks on ESM-Based Variant Predictors
by: Zhan, Huixin
Published: (2025)
by: Zhan, Huixin
Published: (2025)
Similar Items
-
AgriVariant: Variant Effect Prediction using DeepChem-Variant for Precision Breeding in Rice
by: Bisoi, Ankita Vaishnobi, et al.
Published: (2026) -
Open Source Infrastructure for Automatic Cell Segmentation
by: Menezes, Aaron Rock, et al.
Published: (2024) -
Protect$^*$: Steerable Retrosynthesis through Neuro-Symbolic State Encoding
by: Sathyanarayana, Shreyas Vinaya, et al.
Published: (2026) -
Deepmechanics
by: Shinde, Abhay, et al.
Published: (2026) -
Open-Source Molecular Processing Pipeline for Generating Molecules
by: Shreyas, V, et al.
Published: (2024)