Rapid response to fast viral evolution using AlphaFold 3-assisted topological deep learning
Fuente:
arXiv
Saved in:
| Main Authors: | Wee, JunJie, Wei, Guo-Wei |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Benchmarking AlphaFold3's protein-protein complex accuracy and machine learning prediction reliability for binding free energy changes upon mutation
by: Wee, JunJie, et al.
Published: (2024)
by: Wee, JunJie, et al.
Published: (2024)
Impact of phylogeny on the inference of functional sectors from protein sequence data
by: Dietler, Nicola, et al.
Published: (2024)
by: Dietler, Nicola, et al.
Published: (2024)
Characterizing the Conformational States of G Protein Coupled Receptors Generated with AlphaFold
by: Chib, Garima, et al.
Published: (2025)
by: Chib, Garima, et al.
Published: (2025)
Commutative algebra neural network reveals genetic origins of diseases
by: Wee, JunJie, et al.
Published: (2025)
by: Wee, JunJie, et al.
Published: (2025)
Dynamics of antibody binding and neutralization during viral infection
by: Chen, Zhenying, et al.
Published: (2024)
by: Chen, Zhenying, et al.
Published: (2024)
A story of viral co-infection, co-transmission and co-feeding in ticks: how to compute an invasion reproduction number
by: Belluccini, Giulia, et al.
Published: (2024)
by: Belluccini, Giulia, et al.
Published: (2024)
Deep-time consistency in proteome elemental composition across cellular and viral life
by: Benites, L. Felipe, et al.
Published: (2026)
by: Benites, L. Felipe, et al.
Published: (2026)
Physical principles underpinning molecular-level protein evolution
by: Vila, J. A.
Published: (2024)
by: Vila, J. A.
Published: (2024)
Viral population dynamics at the cellular level, considering the replication cycle
by: Park, Seong Jun
Published: (2025)
by: Park, Seong Jun
Published: (2025)
R3F: An R package for evolutionary dates, rates, and priors using the relative rate framework
by: Tao, Qiqing, et al.
Published: (2025)
by: Tao, Qiqing, et al.
Published: (2025)
Within-vector viral dynamics challenges how to model the extrinsic incubation period for major arboviruses: dengue, Zika, and chikungunya
by: Loisel, Léa, et al.
Published: (2024)
by: Loisel, Léa, et al.
Published: (2024)
Evolutionary accumulation modelling in AMR: machine learning to infer and predict evolutionary dynamics of multi-drug resistance
by: Renz, Jessica, et al.
Published: (2024)
by: Renz, Jessica, et al.
Published: (2024)
On the selection and effectiveness of pseudo-absences for species distribution modeling with deep learning
by: Zbinden, Robin, et al.
Published: (2024)
by: Zbinden, Robin, et al.
Published: (2024)
Learning virulence-transmission relationships using causal inference
by: Surasinghe, Sudam, et al.
Published: (2026)
by: Surasinghe, Sudam, et al.
Published: (2026)
On the importance of assessing topological convergence in Bayesian phylogenetic inference
by: Brusselmans, Marius, et al.
Published: (2024)
by: Brusselmans, Marius, et al.
Published: (2024)
Predicting high dengue incidence in municipalities of Brazil using path signatures
by: Villela, Daniel A. M.
Published: (2024)
by: Villela, Daniel A. M.
Published: (2024)
Possible and Impossible Inferences From Reconstructed Evolutionary Processes using Phylogenies as an Example
by: Hohmann, Niklas
Published: (2024)
by: Hohmann, Niklas
Published: (2024)
Towards smart canopies: Algorithmic design of maize canopy architectures that maximize light use efficiency
by: Saleem, Nasla, et al.
Published: (2025)
by: Saleem, Nasla, et al.
Published: (2025)
Modelling species distributions using remote sensing predictors: Comparing Dynamic Habitat Index and LULC
by: Oliveira, Maïri Souza, et al.
Published: (2025)
by: Oliveira, Maïri Souza, et al.
Published: (2025)
A picture guide to cancer progression and monotonic accumulation models: evolutionary assumptions, plausible interpretations, and alternative uses
by: Diaz-Uriarte, Ramon, et al.
Published: (2023)
by: Diaz-Uriarte, Ramon, et al.
Published: (2023)
Two fitness inference schemes compared using allele frequencies from 1,068,391 sequences sampled in the UK during the COVID-19 pandemic
by: Zeng, Hong-Li, et al.
Published: (2024)
by: Zeng, Hong-Li, et al.
Published: (2024)
Inferring infectiousness: a joint model of the within-host viral kinetics of SARS-CoV-2
by: Boyer, Christopher B., et al.
Published: (2026)
by: Boyer, Christopher B., et al.
Published: (2026)
From parcels to people: development of a spatially explicit risk indicator to monitor residential pesticide exposure in agricultural areas
by: Galimberti, Francesco, et al.
Published: (2024)
by: Galimberti, Francesco, et al.
Published: (2024)
Quantifying the direct and indirect impact of COVID-19 vaccination: evidence from Victoria, Australia
by: Lin, Lixin, et al.
Published: (2025)
by: Lin, Lixin, et al.
Published: (2025)
Bayesian Re-Analysis of the Phylogenetic Topology of Early SARS-CoV-2 Case Sequences
by: Weissman, Michael B.
Published: (2025)
by: Weissman, Michael B.
Published: (2025)
How causal inference concepts can guide research into the effects of climate on infectious diseases
by: Guevara, Laura Andrea Barrero, et al.
Published: (2024)
by: Guevara, Laura Andrea Barrero, et al.
Published: (2024)
Quantifying "just-right" APC inactivation for colorectal cancer initiation
by: Guasch, Meritxell Brunet, et al.
Published: (2024)
by: Guasch, Meritxell Brunet, et al.
Published: (2024)
Fast and Accurate Node-Age Estimation Under Fossil Calibration Uncertainty Using the Adjusted Pairwise Likelihood
by: Ellison, Gregory M, et al.
Published: (2025)
by: Ellison, Gregory M, et al.
Published: (2025)
On the Connection Between Differential Population Growth Rate and Epidemic Reproduction Numbers
by: Qin, Hong
Published: (2026)
by: Qin, Hong
Published: (2026)
Likelihood-free inference of phylogenetic tree posterior distributions
by: Blassel, Luc, et al.
Published: (2025)
by: Blassel, Luc, et al.
Published: (2025)
Estimation of end-of-outbreak probabilities in the presence of delayed and incomplete case reporting
by: Plank, M. J., et al.
Published: (2024)
by: Plank, M. J., et al.
Published: (2024)
Time-structured models of population growth in fluctuating environments
by: Pillai, Pradeep, et al.
Published: (2025)
by: Pillai, Pradeep, et al.
Published: (2025)
Dominance reversals: The resolution of genetic conflict and maintenance of genetic variation
by: Grieshop, Karl, et al.
Published: (2021)
by: Grieshop, Karl, et al.
Published: (2021)
Coarse-Graining Cascades Within Food Webs
by: Yeakel, Justin D.
Published: (2025)
by: Yeakel, Justin D.
Published: (2025)
Combining Compositional Data Sets Introduces Error in Covariance Network Reconstruction
by: Brunner, James D., et al.
Published: (2023)
by: Brunner, James D., et al.
Published: (2023)
Mutant fate in spatially structured populations on graphs: connecting models to experiments
by: Abbara, Alia, et al.
Published: (2024)
by: Abbara, Alia, et al.
Published: (2024)
Applications of the Vendi score in genomic epidemiology
by: Nielsen, Bjarke Frost, et al.
Published: (2025)
by: Nielsen, Bjarke Frost, et al.
Published: (2025)
Enhancing data-limited assessments with random effects: A case study on Korea chub mackerel (Scomber japonicus)
by: Kim, Kyuhan, et al.
Published: (2023)
by: Kim, Kyuhan, et al.
Published: (2023)
A Modelling Assessment of the Impact of Control Measures on Simulated Foot-and-Mouth Disease Spread in Mato Grosso do Sul, Brazil
by: Cardenas, Nicolas C., et al.
Published: (2026)
by: Cardenas, Nicolas C., et al.
Published: (2026)
The Nature of Organization in Living Systems
by: Márquez-Zacarías, Pedro, et al.
Published: (2025)
by: Márquez-Zacarías, Pedro, et al.
Published: (2025)
Similar Items
-
Benchmarking AlphaFold3's protein-protein complex accuracy and machine learning prediction reliability for binding free energy changes upon mutation
by: Wee, JunJie, et al.
Published: (2024) -
Impact of phylogeny on the inference of functional sectors from protein sequence data
by: Dietler, Nicola, et al.
Published: (2024) -
Characterizing the Conformational States of G Protein Coupled Receptors Generated with AlphaFold
by: Chib, Garima, et al.
Published: (2025) -
Commutative algebra neural network reveals genetic origins of diseases
by: Wee, JunJie, et al.
Published: (2025) -
Dynamics of antibody binding and neutralization during viral infection
by: Chen, Zhenying, et al.
Published: (2024)