:: Library Catalog

Saved in:

Bibliographic Details
Main Authors:	Zhang, Yijie, Huang, Luzhe, Pillar, Nir, Li, Yuzhu, Migas, Lukasz G., Van de Plas, Raf, Spraggins, Jeffrey M., Ozcan, Aydogan
Format:	Preprint
Published:	2024
Subjects:	Computer Vision and Pattern Recognition Machine Learning Medical Physics Optics
Online Access:	https://arxiv.org/abs/2411.13120
Tags:	Add Tag No Tags, Be the first to tag this record!

A robust and scalable framework for hallucination detection in virtual tissue staining and digital pathology
by: Huang, Luzhe, et al.
Published: (2024)

Virtual birefringence imaging and histological staining of amyloid deposits in label-free tissue using autofluorescence microscopy and deep learning
by: Yang, Xilin, et al.
Published: (2024)

Virtual Gram staining of label-free bacteria using darkfield microscopy and deep learning
by: Isil, Cagatay, et al.
Published: (2024)

Quantitative Stain Mapping in X-ray Virtual Histology
by: John, Dominik, et al.
Published: (2025)

Signal Recovery Using a Spiked Mixture Model
by: Delacour, Paul-Louis, et al.
Published: (2025)

Leveraging Optical Anisotropy of the Morpho Butterfly Wing for Quantitative, Stain-Free, and Contact-Free Assessment of Biological Tissue Microstructures
by: Kirya, Paula, et al.
Published: (2024)

Deep learning-enabled virtual multiplexed immunostaining of label-free tissue for vascular invasion assessment
by: Zhang, Yijie, et al.
Published: (2025)

Universal and Transferable Attacks on Pathology Foundation Models
by: Wang, Yuntian, et al.
Published: (2025)

Virtual histological staining of unlabeled autopsy tissue
by: Li, Yuzhu, et al.
Published: (2023)

BlurryScope enables compact, cost-effective scanning microscopy for HER2 scoring using deep learning on blurry images
by: Fanous, Michael John, et al.
Published: (2024)

Pixel Super-Resolved Fluorescence Lifetime Imaging Using Deep Learning
by: Costa, Paloma Casteleiro, et al.
Published: (2025)

Neural Network-Based Processing and Reconstruction of Compromised Biophotonic Image Data
by: Fanous, Michael John, et al.
Published: (2024)

Gestational Stage Prediction from Cervical Tissue Analysis Using Imaging Mueller Polarimetry Data
by: Chae, Sooyong, et al.
Published: (2026)

Label-free evaluation of lung and heart transplant biopsies using tissue autofluorescence-based virtual staining
by: Li, Yuzhu, et al.
Published: (2024)

Deep Tissue Sensing of Chiral Molecules using Polarization Enhanced Photoacoustics
by: Padmanabhan, Swathi, et al.
Published: (2024)

Multi-Frequency Reverberant Shear Waves for Assessing Tissue Dispersion in Optical Coherence Elastography
by: Asemani, Hamidreza, et al.
Published: (2025)

High-Resolution Dynamic Full-Field Optical Coherence Microscopy: Illuminating Intracellular Activity in Deep Tissue
by: Tarvydas, Erikas, et al.
Published: (2025)

Beneath the Surface: Revealing Deep-Tissue Blood Flow in Human Subjects with Massively Parallelized Diffuse Correlation Spectroscopy
by: Kreiss, Lucas, et al.
Published: (2024)

Deep Learning in Classical X-ray Ghost Imaging for Dose Reduction
by: Huang, Yiyue, et al.
Published: (2024)

A Multimodal Imaging Pipeline for the Discovery of Molecular Markers of Cellular Neighborhoods
by: Pham, Thai, et al.
Published: (2026)

Photon Absorption Remote Sensing (PARS): A Comprehensive Approach to Label-free Absorption Microscopy Across Biological Scales
by: Ecclestone, Benjamin R., et al.
Published: (2024)

Automated Whole Slide Imaging for Label-Free Histology using Photon Absorption Remote Sensing Microscopy
by: Tweel, James E. D., et al.
Published: (2023)

Snapshot multi-spectral imaging through defocusing and a Fourier imager network
by: Yang, Xilin, et al.
Published: (2025)

Automated HER2 Scoring in Breast Cancer Images Using Deep Learning and Pyramid Sampling
by: Selcuk, Sahan Yoruc, et al.
Published: (2024)

Autonomous labeling of surgical resection margins using a foundation model
by: Yang, Xilin, et al.
Published: (2025)

Detection and imaging of chemicals and hidden explosives using terahertz time-domain spectroscopy and deep learning
by: Jiang, Xinghe, et al.
Published: (2025)

Machine Learning Model for Complete Reconstruction of Diagnostic Polarimetric Images from partial Mueller polarimetry data
by: Chae, Sooyong, et al.
Published: (2024)

An Ingestible Light Source for Deep Photoacoustic Imaging
by: Garrett, David C., et al.
Published: (2026)

Membrane stepping optimization in Modulation Based Imaging
by: Perion, Paola, et al.
Published: (2025)

Microfluidic gratings for X-ray Phase Contrast Imaging
by: Rossi, Alessandro, et al.
Published: (2025)

Automated HER2 scoring with uncertainty quantification using lensfree holography and deep learning
by: Shen, Che-Yung, et al.
Published: (2026)

Insights into Polycrystalline Microstructure of Blood Films with 3D Mueller Matrix Imaging Approach
by: Ushenko, Volodimyr A., et al.
Published: (2024)

Hyperspectral acquisition with ScanImage at the single pixel level: Application to time domain coherent Raman imaging
by: Metais, Samuel, et al.
Published: (2024)

Dual Photonics Probing of Nano- to Submicron-Scale Structural Alterations in Human Brain Tissues or Cells and Chromatin or DNA with the Progression of Alzheimers Disease
by: Alharthi, Fatemah, et al.
Published: (2024)

Dose-efficient Automatic Differentiation for Ptychographic Reconstruction
by: Wu, Longlong, et al.
Published: (2024)

Phase-multiplexed optical computing: Reconfiguring a multi-task diffractive optical processor using illumination phase diversity
by: Wang, Xiao, et al.
Published: (2025)

Label-free subcellular 3D imaging of oocytes and embryos via reflection matrix microscopy
by: Giraudat, Elsa, et al.
Published: (2024)

Circulating tumor cell detection in cancer patients using in-flow deep learning holography
by: Mallery, Kevin, et al.
Published: (2025)

Assessing Sensitivity of Brain-to-Scalp Blood Flows in Laser Speckle Imaging by Occluding the Superficial Temporal Artery
by: Huang, Yu Xi, et al.
Published: (2025)

if (filemtime($filename) + $maxlifetime < time()) { unlink($filename); $count++; } } return $count; } /** * A function that is called internally when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ protected function saveSession($sessId, $data): bool { $sessFile = $this->path . '/sess_' . $sessId; if ($handle = fopen($sessFile, 'w')) { $return = false; // Lock the file for exclusive access to avoid issues with multiple // processes writing session simultaneously: if (flock($handle, LOCK_EX)) { $return = fwrite($handle, $data); // Make sure that there's no trailing data by truncating the file to // the correct length: ftruncate($handle, strlen($data)); fflush($handle); flock($handle, LOCK_UN); } fclose($handle); if ($return !== false) { return true; } } // If we got this far, something went wrong with the file output... // It is tempting to throw an exception here, but this code is called // outside of the context of exception handling, so all we can do is // echo a message.

// Anecdotal testing Today and Yesterday seems to indicate destroy() // is called by the garbage collector and everything is good. // Something to keep in mind though. return 0; } /** * Write function that is called when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ public function write($sessId, $data): bool { if ($this->writesDisabled) { return true; } return $this->saveSession($sessId, $data); } /** * A function that is called internally when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ abstract protected function saveSession($sessId, $data): bool; }

* * @return void */ public function writeClose() { // The assumption is that we're using PHP's ext/session. // session_write_close() will actually overwrite $_SESSION with an // empty array on completion -- which leads to a mismatch between what // is in the storage object and $_SESSION. To get around this, we // temporarily reset $_SESSION to an array, and then re-link it to // the storage object. // // Additionally, while you _can_ write to $_SESSION following a // session_write_close() operation, no changes made to it will be // flushed to the session handler. As such, we now mark the storage // object isImmutable. $storage = $this->getStorage(); if (! $storage->isImmutable()) { $_SESSION = $storage->toArray(true); session_write_close(); $storage->fromArray($_SESSION); $storage->markImmutable(); } } /** * Attempt to set the session name * * If the session has already been started, or if the name provided fails * validation, an exception will be raised. * * @param string $name * @return SessionManager * @throws Exception\InvalidArgumentException */ public function setName($name) { if ($this->sessionExists()) { throw new Exception\InvalidArgumentException( 'Cannot set session name after a session has already started'

Environment & details:

GET Data empty

POST Data empty

Files empty

Cookies empty

Session

Key	Value
__Laminas	array:2 [`"_REQUEST_ACCESS_TIME" => 1784512583.9609 "_VALID" => array:1 [ "Laminas\Session\Validator\Id" => "139d88223af0ae89fd79976030a352f9" ]`]
SessionState	Laminas\Stdlib\ArrayObject {#937}
FlashMessenger	Laminas\Stdlib\ArrayObject {#1582}
SessionHelper	Laminas\Stdlib\ArrayObject {#1771}

Server/Request Data

Key	Value
REDIRECT_VUFIND_LOCAL_DIR	"/usr/local/vufind/local"
REDIRECT_HTTPS	"on"
REDIRECT_SSL_TLS_SNI	"info.umar.mx"
REDIRECT_STATUS	"200"
VUFIND_LOCAL_DIR	"/usr/local/vufind/local"
HTTPS	"on"
SSL_TLS_SNI	"info.umar.mx"
HTTP_ACCEPT	"/"
HTTP_USER_AGENT	"Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)"
HTTP_ACCEPT_ENCODING	"gzip, br, zstd, deflate"
HTTP_HOST	"info.umar.mx"
PATH	"/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/snap/bin"
SERVER_SIGNATURE	"<address>Apache/2.4.66 (Ubuntu) Server at info.umar.mx Port 443</address>\n"
SERVER_SOFTWARE	"Apache/2.4.66 (Ubuntu)"
SERVER_NAME	"info.umar.mx"
SERVER_ADDR	"200.23.222.19"
SERVER_PORT	"443"
REMOTE_ADDR	"216.73.216.85"
DOCUMENT_ROOT	"/usr/local/vufind/public"
REQUEST_SCHEME	"https"
CONTEXT_PREFIX	""
CONTEXT_DOCUMENT_ROOT	"/usr/local/vufind/public"
SERVER_ADMIN	"admin@localhost"
SCRIPT_FILENAME	"/usr/local/vufind/public/index.php"
REMOTE_PORT	"51104"
REDIRECT_URL	""" /Record/\n arxiv_https___arxiv_org_abs_2411_13120/Similar """
GATEWAY_INTERFACE	"CGI/1.1"
SERVER_PROTOCOL	"HTTP/1.1"
REQUEST_METHOD	"GET"
QUERY_STRING	""
REQUEST_URI	"/Record/%0Aarxiv_https___arxiv_org_abs_2411_13120/Similar"
SCRIPT_NAME	"/index.php"
PHP_SELF	"/index.php"
REQUEST_TIME_FLOAT	1784512583.9566
REQUEST_TIME	1784512583

Environment Variables empty

Registered Handlers

0. Whoops\Handler\PrettyPageHandler

Environment & details:

GET Data empty

POST Data empty

Files empty

Cookies empty

Session

Key	Value
__Laminas	array:2 [`"_REQUEST_ACCESS_TIME" => 1784512583.9609 "_VALID" => array:1 [ "Laminas\Session\Validator\Id" => "139d88223af0ae89fd79976030a352f9" ]`]
SessionState	Laminas\Stdlib\ArrayObject {#937}
FlashMessenger	Laminas\Stdlib\ArrayObject {#1582}
SessionHelper	Laminas\Stdlib\ArrayObject {#1771}

Server/Request Data

Key	Value
REDIRECT_VUFIND_LOCAL_DIR	"/usr/local/vufind/local"
REDIRECT_HTTPS	"on"
REDIRECT_SSL_TLS_SNI	"info.umar.mx"
REDIRECT_STATUS	"200"
VUFIND_LOCAL_DIR	"/usr/local/vufind/local"
HTTPS	"on"
SSL_TLS_SNI	"info.umar.mx"
HTTP_ACCEPT	"/"
HTTP_USER_AGENT	"Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)"
HTTP_ACCEPT_ENCODING	"gzip, br, zstd, deflate"
HTTP_HOST	"info.umar.mx"
PATH	"/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/snap/bin"
SERVER_SIGNATURE	"<address>Apache/2.4.66 (Ubuntu) Server at info.umar.mx Port 443</address>\n"
SERVER_SOFTWARE	"Apache/2.4.66 (Ubuntu)"
SERVER_NAME	"info.umar.mx"
SERVER_ADDR	"200.23.222.19"
SERVER_PORT	"443"
REMOTE_ADDR	"216.73.216.85"
DOCUMENT_ROOT	"/usr/local/vufind/public"
REQUEST_SCHEME	"https"
CONTEXT_PREFIX	""
CONTEXT_DOCUMENT_ROOT	"/usr/local/vufind/public"
SERVER_ADMIN	"admin@localhost"
SCRIPT_FILENAME	"/usr/local/vufind/public/index.php"
REMOTE_PORT	"51104"
REDIRECT_URL	""" /Record/\n arxiv_https___arxiv_org_abs_2411_13120/Similar """
GATEWAY_INTERFACE	"CGI/1.1"
SERVER_PROTOCOL	"HTTP/1.1"
REQUEST_METHOD	"GET"
QUERY_STRING	""
REQUEST_URI	"/Record/%0Aarxiv_https___arxiv_org_abs_2411_13120/Similar"
SCRIPT_NAME	"/index.php"
PHP_SELF	"/index.php"
REQUEST_TIME_FLOAT	1784512583.9566
REQUEST_TIME	1784512583

Environment Variables empty

Registered Handlers

0. Whoops\Handler\PrettyPageHandler

Similar Items

Similar Items

Environment & details:

Environment & details: