The Hatching-Box: A Novel System for Automated Monitoring and Quantification of Drosophila melanogaster Developmental Behavior
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arXiv
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| Autori principali: | , , , |
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| Natura: | Preprint |
| Pubblicazione: |
2024
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| author | Bigge, Julian Ogueta, Maite Garcia, Luis Risse, Benjamin |
| author_facet | Bigge, Julian Ogueta, Maite Garcia, Luis Risse, Benjamin |
| contents | In this paper we propose the Hatching-Box, a novel imaging and analysis system to automatically monitor and quantify the developmental behavior of Drosophila in standard rearing vials and during regular rearing routines, rendering explicit experiments obsolete. This is achieved by combining custom tailored imaging hardware with dedicated detection and tracking algorithms, enabling the quantification of larvae, filled/empty pupae and flies over multiple days. Given the affordable and reproducible design of the Hatching-Box in combination with our generic client/server-based software, the system can easily be scaled to monitor an arbitrary amount of rearing vials simultaneously. We evaluated our system on a curated image dataset comprising nearly 470,000 annotated objects and performed several studies on real world experiments. We successfully reproduced results from well-established circadian experiments by comparing the eclosion periods of wild type flies to the clock mutants $\textit{per}^{short}$, $\textit{per}^{long}$ and $\textit{per}^0$ without involvement of any manual labor. Furthermore we show, that the Hatching-Box is able to extract additional information about group behavior as well as to reconstruct the whole life-cycle of the individual specimens. These results not only demonstrate the applicability of our system for long-term experiments but also indicate its benefits for automated monitoring in the general cultivation process. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2411_15390 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | The Hatching-Box: A Novel System for Automated Monitoring and Quantification of Drosophila melanogaster Developmental Behavior Bigge, Julian Ogueta, Maite Garcia, Luis Risse, Benjamin Computer Vision and Pattern Recognition In this paper we propose the Hatching-Box, a novel imaging and analysis system to automatically monitor and quantify the developmental behavior of Drosophila in standard rearing vials and during regular rearing routines, rendering explicit experiments obsolete. This is achieved by combining custom tailored imaging hardware with dedicated detection and tracking algorithms, enabling the quantification of larvae, filled/empty pupae and flies over multiple days. Given the affordable and reproducible design of the Hatching-Box in combination with our generic client/server-based software, the system can easily be scaled to monitor an arbitrary amount of rearing vials simultaneously. We evaluated our system on a curated image dataset comprising nearly 470,000 annotated objects and performed several studies on real world experiments. We successfully reproduced results from well-established circadian experiments by comparing the eclosion periods of wild type flies to the clock mutants $\textit{per}^{short}$, $\textit{per}^{long}$ and $\textit{per}^0$ without involvement of any manual labor. Furthermore we show, that the Hatching-Box is able to extract additional information about group behavior as well as to reconstruct the whole life-cycle of the individual specimens. These results not only demonstrate the applicability of our system for long-term experiments but also indicate its benefits for automated monitoring in the general cultivation process. |
| title | The Hatching-Box: A Novel System for Automated Monitoring and Quantification of Drosophila melanogaster Developmental Behavior |
| topic | Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2411.15390 |