Group-wise normalization in differential abundance analysis of microbiome samples
Fuente:
arXiv
Saved in:
| Main Authors: | Clark-Boucher, Dylan, Coull, Brent A, Reeder, Harrison T, Wang, Fenglei, Sun, Qi, Starr, Jacqueline R, Lee, Kyu Ha |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
A nutritionally informed model for Bayesian variable selection with metabolite response variables
by: Clark-Boucher, Dylan, et al.
Published: (2025)
by: Clark-Boucher, Dylan, et al.
Published: (2025)
Metagenomic analysis revealed significant changes in cattle rectum microbiome and antimicrobial resistome under fescue toxicosis
by: Zhou, Yihang
Published: (2024)
by: Zhou, Yihang
Published: (2024)
Learning functional groups in complex microbiomes
by: Schmitt, Matthew S, et al.
Published: (2026)
by: Schmitt, Matthew S, et al.
Published: (2026)
Metagenomic analysis reveals shared and distinguishing features in horse and donkey gut microbiome and maternal resemblance of the microbiota in hybrid equids
by: Zhou, Yihang
Published: (2024)
by: Zhou, Yihang
Published: (2024)
Graph-based variant discovery reveals novel dynamics in the human microbiome
by: Muralidharan, Harihara Subrahmaniam, et al.
Published: (2024)
by: Muralidharan, Harihara Subrahmaniam, et al.
Published: (2024)
GDI MS8 - Incremental demonstrator
by: Spalding, Dylan
Published: (2024)
by: Spalding, Dylan
Published: (2024)
Identifying topologically associating domains using differential kernels
by: Maisuradze, Luka, et al.
Published: (2023)
by: Maisuradze, Luka, et al.
Published: (2023)
Supervised machine learning for microbiomics: bridging the gap between current and best practices
by: Dudek, Natasha K., et al.
Published: (2024)
by: Dudek, Natasha K., et al.
Published: (2024)
consexpressionR: an R package for consensus differential gene expression analysis
by: Costa-Silva, Juliana, et al.
Published: (2025)
by: Costa-Silva, Juliana, et al.
Published: (2025)
CoMMiT: Co-informed inference of microbiome-metabolome interactions via transfer learning
by: Li, Leiyue, et al.
Published: (2025)
by: Li, Leiyue, et al.
Published: (2025)
Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity.
by: Wiederkehr, Fabienne, et al.
Published: (2026)
by: Wiederkehr, Fabienne, et al.
Published: (2026)
A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
by: Davies, Billie E, et al.
Published: (2026)
by: Davies, Billie E, et al.
Published: (2026)
Learnable Group Transform: Enhancing Genotype-to-Phenotype Prediction for Rice Breeding with Small, Structured Datasets
by: Dong, Yunxuan, et al.
Published: (2025)
by: Dong, Yunxuan, et al.
Published: (2025)
Allelism of Rps3b and Rps11 revealed by NLR gene capture of resistance genes to Phytophthora sojae in soybean
by: Yanick Asselin, et al.
Published: (2025)
by: Yanick Asselin, et al.
Published: (2025)
GDI D1.22 - 10th GDI quarterly implementation report
by: Konopko, Melissa, et al.
Published: (2025)
by: Konopko, Melissa, et al.
Published: (2025)
Trait mapping differentiates loci influencing spike and flag leaf glaucousness in wheat
by: Daniela Miller, et al.
Published: (2025)
by: Daniela Miller, et al.
Published: (2025)
Fungal Genetic Variants in Oceanic Environments
by: Davenport, Sade A., et al.
Published: (2025)
by: Davenport, Sade A., et al.
Published: (2025)
A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
by: Munteanu, Viorel, et al.
Published: (2023)
by: Munteanu, Viorel, et al.
Published: (2023)
Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance.
by: Rodríguez-Gijón, Alejandro, et al.
Published: (2025)
by: Rodríguez-Gijón, Alejandro, et al.
Published: (2025)
Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model
by: Lee, UkJin
Published: (2026)
by: Lee, UkJin
Published: (2026)
Variant filters using segregation information improve mapping of nectar‐production genes in sunflower ( Helianthus annuus L.)
by: Ashley C. Barstow, et al.
Published: (2025)
by: Ashley C. Barstow, et al.
Published: (2025)
Nephrobase Cell+: Multimodal Single-Cell Foundation Model for Decoding Kidney Biology
by: Li, Chenyu, et al.
Published: (2025)
by: Li, Chenyu, et al.
Published: (2025)
DuAL-Net: A Hybrid Framework for Alzheimer's Disease Prediction from Whole-Genome Sequencing via Local SNP Windows and Global Annotations
by: Lee, Eun Hye, et al.
Published: (2025)
by: Lee, Eun Hye, et al.
Published: (2025)
GPU-accelerated single-cell analysis at scale with rapids-singlecell
by: Dicks, Severin, et al.
Published: (2026)
by: Dicks, Severin, et al.
Published: (2026)
Comparison of algorithms used in single-cell transcriptomic data analysis
by: Isbarov, Jafar, et al.
Published: (2024)
by: Isbarov, Jafar, et al.
Published: (2024)
A versatile informative diffusion model for single-cell ATAC-seq data generation and analysis
by: Huang, Lei, et al.
Published: (2024)
by: Huang, Lei, et al.
Published: (2024)
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage.
by: Feng, Bo, et al.
Published: (2025)
by: Feng, Bo, et al.
Published: (2025)
Population and herbarium genomics provide a comprehensive framework for a revision of Microcoleus (Cyanobacteria).
by: Skoupý, Svatopluk, et al.
Published: (2026)
by: Skoupý, Svatopluk, et al.
Published: (2026)
ShortCake: An integrated platform for efficient and reproducible single-cell analysis
by: Nakato, Ryuichiro, et al.
Published: (2025)
by: Nakato, Ryuichiro, et al.
Published: (2025)
Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
by: Louvel, Guillaume, et al.
Published: (2024)
by: Louvel, Guillaume, et al.
Published: (2024)
Reference genome for the benthic marine diatom Psammoneis japonica: Bacterial associations and repeat-driven genome size evolution in diatoms.
by: Roberts, Wade R, et al.
Published: (2025)
by: Roberts, Wade R, et al.
Published: (2025)
Retraction: Population genetic analysis of Shaanxi male Han Chinese population reveals genetic differentiation and homogenization of East Asians
Published: (2024)
Published: (2024)
A DNA Methylation Classification Model Predicts Organ and Disease Site
by: Lee, Keng-Jung, et al.
Published: (2025)
by: Lee, Keng-Jung, et al.
Published: (2025)
Electronic Patient Portals as a Modality for Returning Reclassified Genetic Test Results
by: Sukh Makhnoon, et al.
Published: (2025)
by: Sukh Makhnoon, et al.
Published: (2025)
skandiver: a divergence-based analysis tool for identifying intercellular mobile genetic elements
by: Zhang, Xiaolei Brian, et al.
Published: (2024)
by: Zhang, Xiaolei Brian, et al.
Published: (2024)
Complete genome sequence of Lysinibacillus sp. WB86, a potential antimicrobial lanthipeptides producer.
by: Sun, Huai-Ying, et al.
Published: (2025)
by: Sun, Huai-Ying, et al.
Published: (2025)
Allium Vegetables Intake and Digestive System Cancer Risk: A Study Based on Mendelian Randomization, Network Pharmacology and Molecular Docking
by: Li, Shuhao, et al.
Published: (2024)
by: Li, Shuhao, et al.
Published: (2024)
DeeDeeExperiment: Building an infrastructure for integrating and managing omics data analysis results in R/Bioconductor
by: Abassi, Najla, et al.
Published: (2025)
by: Abassi, Najla, et al.
Published: (2025)
Categorization and analysis of 14 computational methods for estimating cell potency from single-cell RNA-seq data
by: Wang, Qingyang, et al.
Published: (2023)
by: Wang, Qingyang, et al.
Published: (2023)
Meta-analysis of scRNA-seq data for choroidal endothelial cells in dry Age-related Macular Degeneration
by: Veksler, Kyle M., et al.
Published: (2026)
by: Veksler, Kyle M., et al.
Published: (2026)
Similar Items
-
A nutritionally informed model for Bayesian variable selection with metabolite response variables
by: Clark-Boucher, Dylan, et al.
Published: (2025) -
Metagenomic analysis revealed significant changes in cattle rectum microbiome and antimicrobial resistome under fescue toxicosis
by: Zhou, Yihang
Published: (2024) -
Learning functional groups in complex microbiomes
by: Schmitt, Matthew S, et al.
Published: (2026) -
Metagenomic analysis reveals shared and distinguishing features in horse and donkey gut microbiome and maternal resemblance of the microbiota in hybrid equids
by: Zhou, Yihang
Published: (2024) -
Graph-based variant discovery reveals novel dynamics in the human microbiome
by: Muralidharan, Harihara Subrahmaniam, et al.
Published: (2024)