Mixing small proteins with lipids and cholesterol
Fuente:
arXiv
Saved in:
| Main Authors: | , |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1866916494703591424 |
|---|---|
| author | Basu, Subhadip Farago, Oded |
| author_facet | Basu, Subhadip Farago, Oded |
| contents | Many ternary mixtures composed of saturated and unsaturated lipids with cholesterol (Chol) exhibit a region of coexistence between liquid-disordered $(L_d)$ and liquid-ordered $(L_o)$ domains, bearing some similarities to lipid rafts in biological membranes. However, biological rafts also contain many proteins that interact with the lipids and modify the distribution of lipids. Here, we extend a previously published lattice model of ternary DPPC/DOPC/Chol mixtures by introducing a small amount of small proteins (peptides). We use Monte Carlo simulations to explore the mixing phase behavior of the components as a function of the interaction parameter representing the affinity between the proteins and the saturated DPPC chains, and for different mixture compositions. At moderate fractions of DPPC, the system is in a two-phase $L_d+L_o$ coexistence, and the proteins exhibit a simple partition behavior between the phases that depends on the protein-lipid affinity parameter. At low DPPC compositions, the mixture is in $L_d$ phase with local nanoscopic ordered domains. Addition of proteins with sufficiently strong attraction to the saturated lipids can induce the separation of a distinct $L_o$ large domain with tightly-packed gel-like clusters of proteins and saturated lipids. Consistent with the theory of phase transitions, we observe that the domain sizes grow when the mixture composition is in the vicinity of the critical point. Our simulations show that the addition of a small amount of proteins to such mixtures can cause their size to grow even further, and lead to the formation of metastable dynamic $L_o$ domains with sizes comparable to biological rafts. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2411_16423 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Mixing small proteins with lipids and cholesterol Basu, Subhadip Farago, Oded Soft Condensed Matter Statistical Mechanics Biological Physics Many ternary mixtures composed of saturated and unsaturated lipids with cholesterol (Chol) exhibit a region of coexistence between liquid-disordered $(L_d)$ and liquid-ordered $(L_o)$ domains, bearing some similarities to lipid rafts in biological membranes. However, biological rafts also contain many proteins that interact with the lipids and modify the distribution of lipids. Here, we extend a previously published lattice model of ternary DPPC/DOPC/Chol mixtures by introducing a small amount of small proteins (peptides). We use Monte Carlo simulations to explore the mixing phase behavior of the components as a function of the interaction parameter representing the affinity between the proteins and the saturated DPPC chains, and for different mixture compositions. At moderate fractions of DPPC, the system is in a two-phase $L_d+L_o$ coexistence, and the proteins exhibit a simple partition behavior between the phases that depends on the protein-lipid affinity parameter. At low DPPC compositions, the mixture is in $L_d$ phase with local nanoscopic ordered domains. Addition of proteins with sufficiently strong attraction to the saturated lipids can induce the separation of a distinct $L_o$ large domain with tightly-packed gel-like clusters of proteins and saturated lipids. Consistent with the theory of phase transitions, we observe that the domain sizes grow when the mixture composition is in the vicinity of the critical point. Our simulations show that the addition of a small amount of proteins to such mixtures can cause their size to grow even further, and lead to the formation of metastable dynamic $L_o$ domains with sizes comparable to biological rafts. |
| title | Mixing small proteins with lipids and cholesterol |
| topic | Soft Condensed Matter Statistical Mechanics Biological Physics |
| url | https://arxiv.org/abs/2411.16423 |