Assessing microbiome engraftment extent following fecal microbiota transplant with q2-fmt
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arXiv
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| Hauptverfasser: | , , , , |
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| Format: | Preprint |
| Veröffentlicht: |
2024
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| _version_ | 1866909406091804672 |
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| author | Herman, Chloe Bolyen, Evan Simard, Anthony Gehret, Liz Caporaso, J. Gregory |
| author_facet | Herman, Chloe Bolyen, Evan Simard, Anthony Gehret, Liz Caporaso, J. Gregory |
| contents | We present q2-fmt, a QIIME 2 plugin that provides diverse methods for assessing the extent of microbiome engraftment following fecal microbiota transplant. The methods implemented here were informed by a recent literature review on approaches for assessing FMT engraftment, and cover aspects of engraftment including Chimeric Asymmetric Community Coalescence, Donated Microbiome Indicator Features, and Temporal Stability. q2-fmt is free for all use, and detailed documentation illustrating worked examples on a real-world data set are provided in the project's documentation. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2411_17901 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Assessing microbiome engraftment extent following fecal microbiota transplant with q2-fmt Herman, Chloe Bolyen, Evan Simard, Anthony Gehret, Liz Caporaso, J. Gregory Other Quantitative Biology We present q2-fmt, a QIIME 2 plugin that provides diverse methods for assessing the extent of microbiome engraftment following fecal microbiota transplant. The methods implemented here were informed by a recent literature review on approaches for assessing FMT engraftment, and cover aspects of engraftment including Chimeric Asymmetric Community Coalescence, Donated Microbiome Indicator Features, and Temporal Stability. q2-fmt is free for all use, and detailed documentation illustrating worked examples on a real-world data set are provided in the project's documentation. |
| title | Assessing microbiome engraftment extent following fecal microbiota transplant with q2-fmt |
| topic | Other Quantitative Biology |
| url | https://arxiv.org/abs/2411.17901 |