The bcc coating of Lennard-Jones crystal nuclei vanishes with a change of local structure detection algorithm
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| Format: | Preprint |
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2024
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| _version_ | 1866915048011595776 |
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| author | Gispen, Willem Ortíz, Alberto Pérez de Alba Dijkstra, Marjolein |
| author_facet | Gispen, Willem Ortíz, Alberto Pérez de Alba Dijkstra, Marjolein |
| contents | Since the influential work of ten Wolde, Ruiz-Montero, and Frenkel [Phys. Rev. Lett. 75, 2714 (1995)], crystal nucleation from a Lennard-Jones fluid has been regarded as a paradigmatic example of metastable crystal ordering at the surface of a critical nucleus. We apply seven commonly used local structure detection algorithms to characterize crystal nuclei obtained from transition path sampling simulations. The polymorph composition of these nuclei varies significantly depending on the algorithm used. Our results indicate that one should be very careful when characterizing the local structure near solid-solid and solid-fluid interfaces. Particles near such interfaces exhibit a local structure distinct from that of bulk fluid or bulk crystal phases. We argue that incorporating outlier detection into the local structure detection method is beneficial, leading to greater confidence in the classification results. Interestingly, the bcc coating nearly disappears when adopting a machine learning method with outlier detection. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2412_03276 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | The bcc coating of Lennard-Jones crystal nuclei vanishes with a change of local structure detection algorithm Gispen, Willem Ortíz, Alberto Pérez de Alba Dijkstra, Marjolein Soft Condensed Matter Since the influential work of ten Wolde, Ruiz-Montero, and Frenkel [Phys. Rev. Lett. 75, 2714 (1995)], crystal nucleation from a Lennard-Jones fluid has been regarded as a paradigmatic example of metastable crystal ordering at the surface of a critical nucleus. We apply seven commonly used local structure detection algorithms to characterize crystal nuclei obtained from transition path sampling simulations. The polymorph composition of these nuclei varies significantly depending on the algorithm used. Our results indicate that one should be very careful when characterizing the local structure near solid-solid and solid-fluid interfaces. Particles near such interfaces exhibit a local structure distinct from that of bulk fluid or bulk crystal phases. We argue that incorporating outlier detection into the local structure detection method is beneficial, leading to greater confidence in the classification results. Interestingly, the bcc coating nearly disappears when adopting a machine learning method with outlier detection. |
| title | The bcc coating of Lennard-Jones crystal nuclei vanishes with a change of local structure detection algorithm |
| topic | Soft Condensed Matter |
| url | https://arxiv.org/abs/2412.03276 |