:: Library Catalog

Cover Image

Saved in:

Bibliographic Details
Main Authors:	Zhao, Wan-Qian, Zhang, Shu-Jie, Guo, Zhan-Yong, Tian, Zeng-Yuan, Cao, Gang-Qiang, Li, Mei-Jun, Qiu, Li-You, Yang, Jin-Yu, Wang, Yong-Kai, Zhang, Shu-Hui, Zheng, Zhi-Fang, Wu, Min-Zhi
Format:	Preprint
Published:	2024
Subjects:	Genomics
Online Access:	https://arxiv.org/abs/2412.06378
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

DNA Fragments in Crude Oil Reveals Earth's Hidden History
by: Zhao, Wan-Qian, et al.
Published: (2024)

Ancient DNA from 120-Million-Year-Old Lycoptera Fossils Reveals Evolutionary Insights
by: Zhao, Wan-Qian, et al.
Published: (2024)

Finding low-complexity DNA sequences with longdust
by: Li, Heng, et al.
Published: (2025)

Landscape of rare‐allele variants in cultivated and wild soybean genomes
by: Zhi Liu, et al.
Published: (2025)

Range-Limited Heaps' Law for Functional DNA Words in the Human Genome
by: Li, Wentian, et al.
Published: (2024)

TrinityDNA: A Bio-Inspired Foundational Model for Efficient Long-Sequence DNA Modeling
by: Yang, Qirong, et al.
Published: (2025)

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis
by: Liu, Zhenke, et al.
Published: (2025)

Securing the Language of Life: Inheritable Watermarks from DNA Language Models to Proteins
by: Zhang, Zaixi, et al.
Published: (2025)

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
by: Li, Hongyang, et al.
Published: (2025)

ECLIPSE: A Composable Pipeline for Predicting ecDNA Formation, Evolution, and Therapeutic Vulnerabilities in Cancer
by: Cheng, Bryan, et al.
Published: (2026)

Identification and Validation of the Key Genes of Diabetic Vasculopathy: Evidence Based on Bioinformatics Analysis and Animal Study
by: Feng Li, et al.
Published: (2025)

JanusDNA: A Powerful Bi-directional Hybrid DNA Foundation Model
by: Duan, Qihao, et al.
Published: (2025)

Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA
by: Qiao, Lifeng, et al.
Published: (2024)

Investigating DNA words and their distributions across the tree of life
by: Koilakos, Charalampos, et al.
Published: (2025)

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA
by: Patel, Aman, et al.
Published: (2024)

Cross-Platform DNA Methylation Classifier for the Eight Molecular Subtypes of Group 3 & 4 Medulloblastoma
by: Abid, Omer, et al.
Published: (2025)

Dy-mer: An Explainable DNA Sequence Representation Scheme using Dictionary Learning
by: Peng, Zhiyuan, et al.
Published: (2024)

DSBplot: Indels in DNA Double-strand Break Repair Experiments
by: Channagiri, Tejasvi, et al.
Published: (2023)

Poisoning the Genome: Targeted Backdoor Attacks on DNA Foundation Models
by: Koilakos, Charalampos, et al.
Published: (2026)

DNA Sequence Classification with Compressors
by: Ozan, Şükrü
Published: (2024)

The mirage of DNA methylation in transcriptional regulation of plants
by: Peter Civan, et al.
Published: (2026)

CodonMoE: DNA Language Models for mRNA Analyses
by: Du, Shiyi, et al.
Published: (2025)

EvoLen: Evolution-Guided Tokenization for DNA Language Model
by: Huang, Nan, et al.
Published: (2026)

D3LM: A Discrete DNA Diffusion Language Model for Bidirectional DNA Understanding and Generation
by: Yang, Zhao, et al.
Published: (2026)

A DNA Methylation Classification Model Predicts Organ and Disease Site
by: Lee, Keng-Jung, et al.
Published: (2025)

GeneZip: Region-Aware Compression for Long Context DNA Modeling
by: Zhao, Jianan, et al.
Published: (2026)

DNA energy constraints shape biological evolutionary trajectories
by: Fariselli, Piero, et al.
Published: (2019)

GeneBreaker: Jailbreak Attacks against DNA Language Models with Pathogenicity Guidance
by: Zhang, Zaixi, et al.
Published: (2025)

In silico tool for identification of colorectal cancer from cell-free DNA biomarkers
by: Mathur, Kartavya, et al.
Published: (2025)

DNACHUNKER: Learnable Tokenization for DNA Language Models
by: Kim, Taewon, et al.
Published: (2026)

Regulatory DNA sequence Design with Reinforcement Learning
by: Yang, Zhao, et al.
Published: (2025)

Reverse-Complement Consistency for DNA Language Models
by: Ma, Mingqian
Published: (2025)

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model
by: Lee, UkJin
Published: (2026)

Just-DNA-Seq, open-source personal genomics platform: longevity science for everyone
by: Anton, Kulaga, et al.
Published: (2024)

Identification and characterization of unique to human regulatory sequences in embryonic stem cells reveal associations with transposable elements, distal enhancers, non-coding RNA, and DNA methylation-driven mechanisms of genome editing
by: Glinsky, Gennadi
Published: (2014)

Evolutionary patterns of DNA base composition at polymorphic sites highlight the role of the environment in shaping barley and rice genomes
by: Xiangjian Gou, et al.
Published: (2024)

scGSDR: Harnessing Gene Semantics for Single-Cell Pharmacological Profiling
by: Huang, Yu-An, et al.
Published: (2025)

MergeDNA: Context-aware Genome Modeling with Dynamic Tokenization through Token Merging
by: Li, Siyuan, et al.
Published: (2025)

EnTao-GPM: DNA Foundation Model for Predicting the Germline Pathogenic Mutations
by: Lin, Zekai, et al.
Published: (2025)

Design and Validation of a Predictive Model for Hepatocellular Carcinoma Based on Genes With Differential Expression Driven by DNA Methylation
by: Geyang Hu, et al.
Published: (2026)