VEPerform: a web resource for evaluating the performance of variant effect predictors
Fuente:
arXiv
Enregistré dans:
| Auteurs principaux: | Zhang, Cindy, Roth, Frederick P. |
|---|---|
| Format: | Preprint |
| Publié: |
2024
|
| Sujets: | |
| Accès en ligne: | |
| Tags: |
Ajouter un tag
Pas de tags, Soyez le premier à ajouter un tag!
|
Documents similaires
Leveraging genomic deep learning models for the prediction of non-coding variant effects
par: Kathail, Pooja, et autres
Publié: (2024)
par: Kathail, Pooja, et autres
Publié: (2024)
Curated loci prime editing (cliPE) for accessible multiplexed assays of variant effect (MAVEs)
par: Biar, Carina G, et autres
Publié: (2025)
par: Biar, Carina G, et autres
Publié: (2025)
Refinement of genetic variants needs attention
par: Abdelwahab, Omar, et autres
Publié: (2024)
par: Abdelwahab, Omar, et autres
Publié: (2024)
Genome‐wide development of intra‐ and inter‐specific transferable SSR markers and construction of a dynamic web resource for yam molecular breeding: Y2MD
par: Moussa Diouf, et autres
Publié: (2024)
par: Moussa Diouf, et autres
Publié: (2024)
Combining multiplexed functional data to improve variant classification
par: Alliance, Atlas of Variant Effects, et autres
Publié: (2025)
par: Alliance, Atlas of Variant Effects, et autres
Publié: (2025)
Challenges in structural variant calling in low-complexity regions
par: Qin, Qian, et autres
Publié: (2025)
par: Qin, Qian, et autres
Publié: (2025)
Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks
par: Kouřil, David, et autres
Publié: (2025)
par: Kouřil, David, et autres
Publié: (2025)
MedakaBase as a unified genomic resource platform for medaka fish biology.
par: Morikami, Kenji, et autres
Publié: (2025)
par: Morikami, Kenji, et autres
Publié: (2025)
Graph-based variant discovery reveals novel dynamics in the human microbiome
par: Muralidharan, Harihara Subrahmaniam, et autres
Publié: (2024)
par: Muralidharan, Harihara Subrahmaniam, et autres
Publié: (2024)
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
par: Li, Hongyang, et autres
Publié: (2025)
par: Li, Hongyang, et autres
Publié: (2025)
Finding easy regions for short-read variant calling from pangenome data
par: Li, Heng
Publié: (2025)
par: Li, Heng
Publié: (2025)
New genomic resources to boost research in reproductive biology to enable cost‐effective hybrid seed production
par: Antje Rohde, et autres
Publié: (2025)
par: Antje Rohde, et autres
Publié: (2025)
Landscape of rare‐allele variants in cultivated and wild soybean genomes
par: Zhi Liu, et autres
Publié: (2025)
par: Zhi Liu, et autres
Publié: (2025)
needLR: Long-read structural variant annotation with population-scale frequency estimation
par: Gustafson, Jonas A., et autres
Publié: (2025)
par: Gustafson, Jonas A., et autres
Publié: (2025)
The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation.
par: Kosch, Tiffany A, et autres
Publié: (2024)
par: Kosch, Tiffany A, et autres
Publié: (2024)
GlobDB: A comprehensive species-dereplicated microbial genome resource
par: Speth, Daan R., et autres
Publié: (2025)
par: Speth, Daan R., et autres
Publié: (2025)
grenepipe: A flexible, scalable, and reproducible pipeline to automate variant and frequency calling from sequence reads
par: Czech, Lucas, et autres
Publié: (2021)
par: Czech, Lucas, et autres
Publié: (2021)
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
par: Consortium, The Critical Assessment of Genome Interpretation
Publié: (2022)
par: Consortium, The Critical Assessment of Genome Interpretation
Publié: (2022)
The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology
par: Gill, Erin E., et autres
Publié: (2024)
par: Gill, Erin E., et autres
Publié: (2024)
How chromatin interactions shed light on interpreting non-coding genomic variants: opportunities and future direc-tions
par: Liang, Yuheng, et autres
Publié: (2024)
par: Liang, Yuheng, et autres
Publié: (2024)
Diverse reference genomes detect variants in the US winter wheat
par: Kyle Parker, et autres
Publié: (2025)
par: Kyle Parker, et autres
Publié: (2025)
BioKlustering: a web app for semi-supervised learning of maximally imbalanced genomic data
par: Ozminkowski, Samuel, et autres
Publié: (2022)
par: Ozminkowski, Samuel, et autres
Publié: (2022)
A frequentist test of proportional colocalization after selecting relevant genetic variants
par: Patel, Ashish, et autres
Publié: (2024)
par: Patel, Ashish, et autres
Publié: (2024)
Harnessing genomic resources for passion fruit improvement: Progress and prospects
par: Khushboo Fulara, et autres
Publié: (2026)
par: Khushboo Fulara, et autres
Publié: (2026)
A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
par: Davies, Billie E, et autres
Publié: (2026)
par: Davies, Billie E, et autres
Publié: (2026)
Systematic evaluation of the isolated effect of tissue environment on the transcriptome using a single-cell RNA-seq atlas dataset
par: Okada, Daigo, et autres
Publié: (2024)
par: Okada, Daigo, et autres
Publié: (2024)
Exon disruptive variants in Populus trichocarpa associated with wood properties exhibit distinct gene expression patterns
par: Anthony Piot, et autres
Publié: (2024)
par: Anthony Piot, et autres
Publié: (2024)
Hereditary breast cancer next‐generation sequencing panel evaluation in the south region of Brazil: A novel BRCA2 candidate pathogenic variant is reported
par: Cesar Augusto B. Duarte, et autres
Publié: (2024)
par: Cesar Augusto B. Duarte, et autres
Publié: (2024)
Correction to “Exon disruptive variants in Populus trichocarpa associated with wood properties exhibit distinct gene expression patterns”
Publié: (2026)
Publié: (2026)
Genomic prediction in Persian walnut: Optimization levers according to genetic architecture of complex traits
par: Anthony Bernard, et autres
Publié: (2025)
par: Anthony Bernard, et autres
Publié: (2025)
Sparse testing designs for optimizing resource allocation in multi‐environment cassava breeding trials
par: Nelson Lubanga, et autres
Publié: (2025)
par: Nelson Lubanga, et autres
Publié: (2025)
Third‐generation sequencing identified two rare α‐chain variants leading to hemoglobin variants in Chinese population
par: Jianlong Zhuang, et autres
Publié: (2024)
par: Jianlong Zhuang, et autres
Publié: (2024)
AtSubP‐2.0: An integrated web server for the annotation of Arabidopsis proteome subcellular localization using deep learning
par: Naveen Duhan, et autres
Publié: (2025)
par: Naveen Duhan, et autres
Publié: (2025)
A harmonized benchmarking framework for implementation-aware evaluation of 46 polygenic risk score tools across binary and continuous phenotypes
par: Muneeb, Muhammad, et autres
Publié: (2026)
par: Muneeb, Muhammad, et autres
Publié: (2026)
gggenomes: effective and versatile visualizations for comparative genomics
par: Hackl, Thomas, et autres
Publié: (2024)
par: Hackl, Thomas, et autres
Publié: (2024)
Retinitis pigmentosa with iris coloboma due to miR‐204 gene variant in a Chinese family
par: Zhang Lei, et autres
Publié: (2024)
par: Zhang Lei, et autres
Publié: (2024)
Brainstem dominant form of X‐linked adrenoleukodystrophy with a novel ABCD1 missense variant: A case report and literature review
par: Yulai Kang, et autres
Publié: (2024)
par: Yulai Kang, et autres
Publié: (2024)
Multisystem disorder associated with a pathogenic variant in CLCN7 in the absence of osteopetrosis
par: Chung‐Lin Lee, et autres
Publié: (2024)
par: Chung‐Lin Lee, et autres
Publié: (2024)
Fine-tuning the ESM2 protein language model to understand the functional impact of missense variants
par: Saadat, Ali, et autres
Publié: (2024)
par: Saadat, Ali, et autres
Publié: (2024)
Integrative chromosome‐scale genome analysis of cupuassu provides insights into witches' broom disease resistance and expands genomic resources for Theobroma
par: Vinicius A. C. de Abreu, et autres
Publié: (2026)
par: Vinicius A. C. de Abreu, et autres
Publié: (2026)
Documents similaires
-
Leveraging genomic deep learning models for the prediction of non-coding variant effects
par: Kathail, Pooja, et autres
Publié: (2024) -
Curated loci prime editing (cliPE) for accessible multiplexed assays of variant effect (MAVEs)
par: Biar, Carina G, et autres
Publié: (2025) -
Refinement of genetic variants needs attention
par: Abdelwahab, Omar, et autres
Publié: (2024) -
Genome‐wide development of intra‐ and inter‐specific transferable SSR markers and construction of a dynamic web resource for yam molecular breeding: Y2MD
par: Moussa Diouf, et autres
Publié: (2024) -
Combining multiplexed functional data to improve variant classification
par: Alliance, Atlas of Variant Effects, et autres
Publié: (2025)