Learning Biomolecular Models using Signal Temporal Logic
Fuente:
arXiv
Saved in:
| Main Authors: | Krasowski, Hanna, Palanques-Tost, Eric, Belta, Calin, Arcak, Murat |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
STL-based Optimization of Biomolecular Neural Networks for Regression and Control
by: Palanques-Tost, Eric, et al.
Published: (2025)
by: Palanques-Tost, Eric, et al.
Published: (2025)
Biomolecular LQR under Partial Observation
by: Zhang, Xiaoyu, et al.
Published: (2025)
by: Zhang, Xiaoyu, et al.
Published: (2025)
Learning to Drive by Imitating Surrounding Vehicles
by: Sonmez, Yasin, et al.
Published: (2025)
by: Sonmez, Yasin, et al.
Published: (2025)
On Quantum Random Walks in Biomolecular Networks
by: Dubovitskii, Viacheslav, et al.
Published: (2025)
by: Dubovitskii, Viacheslav, et al.
Published: (2025)
Probably Approximately Correct (PAC) Guarantees for Data-Driven Reachability Analysis: A Theoretical and Empirical Comparison
by: Dietrich, Elizabeth, et al.
Published: (2026)
by: Dietrich, Elizabeth, et al.
Published: (2026)
pacSTL: PAC-Bounded Signal Temporal Logic from Data-Driven Reachability Analysis
by: Dietrich, Elizabeth, et al.
Published: (2025)
by: Dietrich, Elizabeth, et al.
Published: (2025)
First-Passage Time Fluctuation Theorem and Thermodynamic Bound in Cooperative Biomolecular Networks
by: Piephoff, D. Evan, et al.
Published: (2025)
by: Piephoff, D. Evan, et al.
Published: (2025)
Fluctuation Theorems from a Continuous-Time Markov Model of Information-Thermodynamic Capacity in Biochemical Signal Cascades
by: Tsuruyama, Tatsuaki
Published: (2026)
by: Tsuruyama, Tatsuaki
Published: (2026)
Determinants of Phase-Separation Propensities, Material States, and Material Properties of Biomolecular Condensates
by: Zhou, Huan-Xiang
Published: (2026)
by: Zhou, Huan-Xiang
Published: (2026)
Intelligent Sailing Model for Open Sea Navigation
by: Krasowski, Hanna, et al.
Published: (2025)
by: Krasowski, Hanna, et al.
Published: (2025)
From Static to Dynamic: Exploring Temporal Networks in Systems Biology
by: Khazaal, Abir, et al.
Published: (2025)
by: Khazaal, Abir, et al.
Published: (2025)
Integrating Endothelial-Derived Hyperpolarizing Signaling into a Multitarget Therapeutic Strategy for Microvascular Disease
by: Madeddu, Paolo, et al.
Published: (2025)
by: Madeddu, Paolo, et al.
Published: (2025)
Lomics: Generation of Pathways and Gene Sets using Large Language Models for Transcriptomic Analysis
by: Wong, Chun-Ka, et al.
Published: (2024)
by: Wong, Chun-Ka, et al.
Published: (2024)
Stochastic Thermodynamics of Cooperative Biomolecular Machines: Fluctuation Relations and Hidden Detailed Balance Breaking
by: Piephoff, D. Evan, et al.
Published: (2025)
by: Piephoff, D. Evan, et al.
Published: (2025)
Allostery Beyond Amplification: Temporal Regulation of Signaling Information
by: Pessoa, Pedro, et al.
Published: (2026)
by: Pessoa, Pedro, et al.
Published: (2026)
A Topology-Based Machine Learning Model Decisively Outperforms Flux Balance Analysis in Predicting Metabolic Gene Essentiality
by: Boone, Justin
Published: (2025)
by: Boone, Justin
Published: (2025)
Importance Sampling for Statistical Certification of Viable Initial Sets
by: Dietrich, Elizabeth, et al.
Published: (2026)
by: Dietrich, Elizabeth, et al.
Published: (2026)
Trading bits in the readout from a genetic network
by: Bauer, Marianne, et al.
Published: (2020)
by: Bauer, Marianne, et al.
Published: (2020)
Relating biomarkers and phenotypes using dynamical trap spaces
by: Pastva, Samuel, et al.
Published: (2026)
by: Pastva, Samuel, et al.
Published: (2026)
Transcriptome and Redox Proteome Reveal Temporal Scales of Carbon Metabolism Regulation in Model Cyanobacteria Under Light Disturbance
by: Johnson, Connah G. M., et al.
Published: (2024)
by: Johnson, Connah G. M., et al.
Published: (2024)
Parsimonious computational inference protocol for Boolean networks: Application to osteogenesis
by: Demongeot, Jacques, et al.
Published: (2026)
by: Demongeot, Jacques, et al.
Published: (2026)
Estimating Propensity Parameters using Google PageRank and Genetic Algorithms
by: Murrugarra, David, et al.
Published: (2016)
by: Murrugarra, David, et al.
Published: (2016)
Accelerated Learning with Linear Temporal Logic using Differentiable Simulation
by: Bozkurt, Alper Kamil, et al.
Published: (2025)
by: Bozkurt, Alper Kamil, et al.
Published: (2025)
DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks
by: Shutta, Katherine H., et al.
Published: (2021)
by: Shutta, Katherine H., et al.
Published: (2021)
Understanding Cellular Noise with Optical Perturbation and Deep Learning
by: Liu, Chuanbo, et al.
Published: (2024)
by: Liu, Chuanbo, et al.
Published: (2024)
Analyzing and Comparing Omicron Lineage Variants Protein-Protein Interaction Network using Centrality Measure
by: Das, Mamata, et al.
Published: (2023)
by: Das, Mamata, et al.
Published: (2023)
Analysis of Signal Distortion in Molecular Communication Channels Using Frequency Response
by: Kitada, Shoichiro, et al.
Published: (2024)
by: Kitada, Shoichiro, et al.
Published: (2024)
Optimal Inference of Asynchronous Boolean Network Models
by: Karlebach, Guy
Published: (2025)
by: Karlebach, Guy
Published: (2025)
Central Dogma Cycle and Network: A Model for Cell Memory
by: Schiller, Martin R.
Published: (2025)
by: Schiller, Martin R.
Published: (2025)
Modeling Dynamics, Cell Type Specificity, and Perturbations in Gene Regulatory Networks
by: Shin, Junha, et al.
Published: (2026)
by: Shin, Junha, et al.
Published: (2026)
Effects of Model Reduction on Coherence and Information Transfer in Stochastic Biochemical Systems
by: Lozano, Juan David Marmolejo, et al.
Published: (2025)
by: Lozano, Juan David Marmolejo, et al.
Published: (2025)
GenAI-Net: A Generative AI Framework for Automated Biomolecular Network Design
by: Filo, Maurice, et al.
Published: (2026)
by: Filo, Maurice, et al.
Published: (2026)
Modelling 1D Partially Absorbing Boundaries for Brownian Molecular Communication Channels
by: Koca, Caglar, et al.
Published: (2024)
by: Koca, Caglar, et al.
Published: (2024)
Enhancing Biosecurity in Tamper-Resistant Large Language Models With Quantum Gradient Descent
by: Hai, Fahmida, et al.
Published: (2025)
by: Hai, Fahmida, et al.
Published: (2025)
A Systemic Pathological Network Model and Combinatorial Intervention Strategies for Alzheimer's Disease
by: Xutong, She
Published: (2025)
by: Xutong, She
Published: (2025)
Hill Function-based Model of Transcriptional Response: Impact of Nonspecific Binding and RNAP Interactions
by: Shi, Wenjia, et al.
Published: (2024)
by: Shi, Wenjia, et al.
Published: (2024)
Multi-Scale Hybrid Modeling to Predict Cell Culture Process with Metabolic Phase Transitions
by: Wang, Keqi, et al.
Published: (2024)
by: Wang, Keqi, et al.
Published: (2024)
Alias4SBML: A Python Package for Generating Alias Nodes in SBML Models
by: Heydarabadipour, Adel, et al.
Published: (2025)
by: Heydarabadipour, Adel, et al.
Published: (2025)
Biological Multi-Layer and Single Cell Network-Based Multiomics Models - a Review
by: Barylli, Marcello, et al.
Published: (2025)
by: Barylli, Marcello, et al.
Published: (2025)
Modelling Chemical Reaction Networks using Neural Ordinary Differential Equations
by: Thöni, Anna C. M., et al.
Published: (2025)
by: Thöni, Anna C. M., et al.
Published: (2025)
Similar Items
-
STL-based Optimization of Biomolecular Neural Networks for Regression and Control
by: Palanques-Tost, Eric, et al.
Published: (2025) -
Biomolecular LQR under Partial Observation
by: Zhang, Xiaoyu, et al.
Published: (2025) -
Learning to Drive by Imitating Surrounding Vehicles
by: Sonmez, Yasin, et al.
Published: (2025) -
On Quantum Random Walks in Biomolecular Networks
by: Dubovitskii, Viacheslav, et al.
Published: (2025) -
Probably Approximately Correct (PAC) Guarantees for Data-Driven Reachability Analysis: A Theoretical and Empirical Comparison
by: Dietrich, Elizabeth, et al.
Published: (2026)