PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation
Fuente:
arXiv
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| Main Authors: | Duan, ChenRui, Zang, Zelin, Li, Siyuan, Xu, Yongjie, Li, Stan Z. |
|---|---|
| Format: | Preprint |
| Published: |
2024
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| Subjects: | |
| Online Access: | |
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