Parallel DNA Sequence Alignment on High-Performance Systems with CUDA and MPI
Fuente:
arXiv
Saved in:
| Main Author: | Zwaka, Linus |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
High-Performance Parallelization of Dijkstra's Algorithm Using MPI and CUDA
by: Song, Boyang
Published: (2025)
by: Song, Boyang
Published: (2025)
Parallel Paradigms in Modern HPC: A Comparative Analysis of MPI, OpenMP, and CUDA
by: ALHafez, Nizar, et al.
Published: (2025)
by: ALHafez, Nizar, et al.
Published: (2025)
Parallel Gaussian process with kernel approximation in CUDA
by: Carminati, Davide
Published: (2024)
by: Carminati, Davide
Published: (2024)
Parallel Spawning Strategies for Dynamic-Aware MPI Applications
by: Martín-Álvarez, Iker, et al.
Published: (2025)
by: Martín-Álvarez, Iker, et al.
Published: (2025)
Analyzing Persistent Alltoallv RMA Implementations for High-Performance MPI Communication
by: Namugwanya, Evelyn
Published: (2026)
by: Namugwanya, Evelyn
Published: (2026)
Implementing True MPI Sessions and Evaluating MPI Initialization Scalability
by: Zhou, Hui, et al.
Published: (2026)
by: Zhou, Hui, et al.
Published: (2026)
Boosting Performance of Iterative Applications on GPUs: Kernel Batching with CUDA Graphs
by: Ekelund, Jonah, et al.
Published: (2025)
by: Ekelund, Jonah, et al.
Published: (2025)
DNA sequence alignment: An assignment for OpenMP, MPI, and CUDA/OpenCL
by: Gonzalez-Escribano, Arturo, et al.
Published: (2024)
by: Gonzalez-Escribano, Arturo, et al.
Published: (2024)
MPI Progress For All
by: Zhou, Hui, et al.
Published: (2024)
by: Zhou, Hui, et al.
Published: (2024)
Performance of a high-order MPI-Kokkos accelerated fluid solver
by: Sporykhin, Filipp, et al.
Published: (2025)
by: Sporykhin, Filipp, et al.
Published: (2025)
Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with SW Sequence Alignment
by: Costanzo, Manuel, et al.
Published: (2024)
by: Costanzo, Manuel, et al.
Published: (2024)
Scaling MPI Applications on Aurora
by: Ibeid, Huda, et al.
Published: (2025)
by: Ibeid, Huda, et al.
Published: (2025)
cuVegas: Accelerate Multidimensional Monte Carlo Integration through a Parallelized CUDA-based Implementation of the VEGAS Enhanced Algorithm
by: Tolotti, Emiliano, et al.
Published: (2024)
by: Tolotti, Emiliano, et al.
Published: (2024)
MPI-over-CXL: Enhancing Communication Efficiency in Distributed HPC Systems
by: Kwon, Miryeong, et al.
Published: (2025)
by: Kwon, Miryeong, et al.
Published: (2025)
On the performance of two-sided MPI, MPI-3 RMA and SHMEM in a Lagrangian particle cluster algorithm
by: Frey, Matthias, et al.
Published: (2024)
by: Frey, Matthias, et al.
Published: (2024)
Some New Approaches to MPI Implementations
by: Xiong, Yuqing
Published: (2024)
by: Xiong, Yuqing
Published: (2024)
Designing and Prototyping Extensions to MPI in MPICH
by: Zhou, Hui, et al.
Published: (2024)
by: Zhou, Hui, et al.
Published: (2024)
Persistent and Partitioned MPI for Stencil Communication
by: Collom, Gerald, et al.
Published: (2025)
by: Collom, Gerald, et al.
Published: (2025)
Frustrated with MPI+Threads? Try MPIxThreads!
by: Zhou, Hui, et al.
Published: (2024)
by: Zhou, Hui, et al.
Published: (2024)
Concepts for designing modern C++ interfaces for MPI
by: Avans, C. Nicole, et al.
Published: (2025)
by: Avans, C. Nicole, et al.
Published: (2025)
STELLAR: Storage Tuning Engine Leveraging LLM Autonomous Reasoning for High Performance Parallel File Systems
by: Egersdoerfer, Chris, et al.
Published: (2026)
by: Egersdoerfer, Chris, et al.
Published: (2026)
Deep Learning and Machine Learning with GPGPU and CUDA: Unlocking the Power of Parallel Computing
by: Li, Ming, et al.
Published: (2024)
by: Li, Ming, et al.
Published: (2024)
Understanding GPU Triggering APIs for MPI+X Communication
by: Bridges, Patrick G., et al.
Published: (2024)
by: Bridges, Patrick G., et al.
Published: (2024)
Examining MPI and its Extensions for Asynchronous Multithreaded Communication
by: Yan, Jiakun, et al.
Published: (2025)
by: Yan, Jiakun, et al.
Published: (2025)
The Case for ABI Interoperability in a Fault Tolerant MPI
by: Xu, Yao, et al.
Published: (2025)
by: Xu, Yao, et al.
Published: (2025)
Towards the Democratization and Standardization of Dynamic Resources with MPI Spawning
by: Iserte, Sergio, et al.
Published: (2026)
by: Iserte, Sergio, et al.
Published: (2026)
The Merit of Simple Policies: Buying Performance With Parallelism and System Architecture
by: Yildiz, Mert, et al.
Published: (2025)
by: Yildiz, Mert, et al.
Published: (2025)
A Performance Analysis of Task Scheduling for UQ Workflows on HPC Systems
by: Loi, Chung Ming, et al.
Published: (2025)
by: Loi, Chung Ming, et al.
Published: (2025)
To Repair or Not to Repair: Assessing Fault Resilience in MPI Stencil Applications
by: Rocco, Roberto, et al.
Published: (2024)
by: Rocco, Roberto, et al.
Published: (2024)
Layout-Agnostic MPI Abstraction for Distributed Computing in Modern C++
by: Klepl, Jiří, et al.
Published: (2025)
by: Klepl, Jiří, et al.
Published: (2025)
Exploring Performance-Productivity Trade-offs in AMT Runtimes: A Task Bench Study of Itoyori, ItoyoriFBC, HPX, and MPI
by: Lahnor, Torben R., et al.
Published: (2026)
by: Lahnor, Torben R., et al.
Published: (2026)
Design Principles of Dynamic Resource Management for High-Performance Parallel Programming Models
by: Huber, Dominik, et al.
Published: (2024)
by: Huber, Dominik, et al.
Published: (2024)
KaMPIng: Flexible and (Near) Zero-Overhead C++ Bindings for MPI
by: Uhl, Tim Niklas, et al.
Published: (2024)
by: Uhl, Tim Niklas, et al.
Published: (2024)
Resource Optimization with MPI Process Malleability for Dynamic Workloads in HPC Clusters
by: Iserte, Sergio, et al.
Published: (2025)
by: Iserte, Sergio, et al.
Published: (2025)
MPI Malleability Validation under Replayed Real-World HPC Conditions
by: Iserte, S., et al.
Published: (2026)
by: Iserte, S., et al.
Published: (2026)
An Optimized Error-controlled MPI Collective Framework Integrated with Lossy Compression
by: Huang, Jiajun, et al.
Published: (2023)
by: Huang, Jiajun, et al.
Published: (2023)
Concurrent Scheduling of High-Level Parallel Programs on Multi-GPU Systems
by: Knorr, Fabian, et al.
Published: (2025)
by: Knorr, Fabian, et al.
Published: (2025)
Synthesizing Proxy Applications for MPI Programs
by: Luo, Jiyu, et al.
Published: (2023)
by: Luo, Jiyu, et al.
Published: (2023)
Parallel Reduced Order Modeling for Digital Twins using High-Performance Computing Workflows
by: de Parga, S. Ares, et al.
Published: (2024)
by: de Parga, S. Ares, et al.
Published: (2024)
The Entropy of Parallel Systems
by: Adefemi, Temitayo
Published: (2025)
by: Adefemi, Temitayo
Published: (2025)
Similar Items
-
High-Performance Parallelization of Dijkstra's Algorithm Using MPI and CUDA
by: Song, Boyang
Published: (2025) -
Parallel Paradigms in Modern HPC: A Comparative Analysis of MPI, OpenMP, and CUDA
by: ALHafez, Nizar, et al.
Published: (2025) -
Parallel Gaussian process with kernel approximation in CUDA
by: Carminati, Davide
Published: (2024) -
Parallel Spawning Strategies for Dynamic-Aware MPI Applications
by: Martín-Álvarez, Iker, et al.
Published: (2025) -
Analyzing Persistent Alltoallv RMA Implementations for High-Performance MPI Communication
by: Namugwanya, Evelyn
Published: (2026)