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Hauptverfasser: Chen, Mingyang, Jin, Luhong, Xuan, Xuwei, Yang, Defu, Cheng, Yun, Zhang, Ju
Format: Preprint
Veröffentlicht: 2025
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Online-Zugang:https://arxiv.org/abs/2501.05490
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author Chen, Mingyang
Jin, Luhong
Xuan, Xuwei
Yang, Defu
Cheng, Yun
Zhang, Ju
author_facet Chen, Mingyang
Jin, Luhong
Xuan, Xuwei
Yang, Defu
Cheng, Yun
Zhang, Ju
contents Live-cell imaging of multiple subcellular structures is essential for understanding subcellular dynamics. However, the conventional multi-color sequential fluorescence microscopy suffers from significant imaging delays and limited number of subcellular structure separate labeling, resulting in substantial limitations for real-time live-cell research applications. Here, we present the Adaptive Explainable Multi-Structure Network (AEMS-Net), a deep-learning framework that enables simultaneous prediction of two subcellular structures from a single image. The model normalizes staining intensity and prioritizes critical image features by integrating attention mechanisms and brightness adaptation layers. Leveraging the Kolmogorov-Arnold representation theorem, our model decomposes learned features into interpretable univariate functions, enhancing the explainability of complex subcellular morphologies. We demonstrate that AEMS-Net allows real-time recording of interactions between mitochondria and microtubules, requiring only half the conventional sequential-channel imaging procedures. Notably, this approach achieves over 30% improvement in imaging quality compared to traditional deep learning methods, establishing a new paradigm for long-term, interpretable live-cell imaging that advances the ability to explore subcellular dynamics.
format Preprint
id arxiv_https___arxiv_org_abs_2501_05490
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Interpretable deep learning illuminates multiple structures fluorescence imaging: a path toward trustworthy artificial intelligence in microscopy
Chen, Mingyang
Jin, Luhong
Xuan, Xuwei
Yang, Defu
Cheng, Yun
Zhang, Ju
Subcellular Processes
Artificial Intelligence
Image and Video Processing
Live-cell imaging of multiple subcellular structures is essential for understanding subcellular dynamics. However, the conventional multi-color sequential fluorescence microscopy suffers from significant imaging delays and limited number of subcellular structure separate labeling, resulting in substantial limitations for real-time live-cell research applications. Here, we present the Adaptive Explainable Multi-Structure Network (AEMS-Net), a deep-learning framework that enables simultaneous prediction of two subcellular structures from a single image. The model normalizes staining intensity and prioritizes critical image features by integrating attention mechanisms and brightness adaptation layers. Leveraging the Kolmogorov-Arnold representation theorem, our model decomposes learned features into interpretable univariate functions, enhancing the explainability of complex subcellular morphologies. We demonstrate that AEMS-Net allows real-time recording of interactions between mitochondria and microtubules, requiring only half the conventional sequential-channel imaging procedures. Notably, this approach achieves over 30% improvement in imaging quality compared to traditional deep learning methods, establishing a new paradigm for long-term, interpretable live-cell imaging that advances the ability to explore subcellular dynamics.
title Interpretable deep learning illuminates multiple structures fluorescence imaging: a path toward trustworthy artificial intelligence in microscopy
topic Subcellular Processes
Artificial Intelligence
Image and Video Processing
url https://arxiv.org/abs/2501.05490