COLOR: A compositional linear operation-based representation of protein sequences for identification of monomer contributions to properties
Fuente:
arXiv
Enregistré dans:
| Auteurs principaux: | Pandey, Akash, Chen, Wei, Keten, Sinan |
|---|---|
| Format: | Preprint |
| Publié: |
2025
|
| Sujets: | |
| Accès en ligne: | |
| Tags: |
Ajouter un tag
Pas de tags, Soyez le premier à ajouter un tag!
|
Documents similaires
Predicting protein folding dynamics using sequence information
par: Galpern, Ezequiel A., et autres
Publié: (2025)
par: Galpern, Ezequiel A., et autres
Publié: (2025)
ProteinGuide: On-the-fly property guidance for protein sequence generative models
par: Xiong, Junhao, et autres
Publié: (2025)
par: Xiong, Junhao, et autres
Publié: (2025)
From sequence to protein structure and conformational dynamics with AI/ML
par: Ille, Alexander M., et autres
Publié: (2025)
par: Ille, Alexander M., et autres
Publié: (2025)
Inferring protein folding mechanisms from natural sequence diversity
par: Galpern, Ezequiel A., et autres
Publié: (2024)
par: Galpern, Ezequiel A., et autres
Publié: (2024)
Towards deep learning sequence-structure co-generation for protein design
par: Wang, Chentong, et autres
Publié: (2024)
par: Wang, Chentong, et autres
Publié: (2024)
ApexGen: Simultaneous design of peptide binder sequence and structure for target proteins
par: Xia, Xiaoqiong, et autres
Publié: (2025)
par: Xia, Xiaoqiong, et autres
Publié: (2025)
Out-of-equilibrium selection pressure enhances inference from protein sequence data
par: Dietler, Nicola, et autres
Publié: (2026)
par: Dietler, Nicola, et autres
Publié: (2026)
Machine learning methods to study sequence-ensemble-function relationships in disordered proteins
par: von Bülow, Sören, et autres
Publié: (2024)
par: von Bülow, Sören, et autres
Publié: (2024)
Bistability in filamentous actin through monomer-sequestration of an effector species
par: Foteinopoulos, Panayiotis, et autres
Publié: (2024)
par: Foteinopoulos, Panayiotis, et autres
Publié: (2024)
State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences
par: Xing, Enming, et autres
Publié: (2025)
par: Xing, Enming, et autres
Publié: (2025)
DiffPaSS -- High-performance differentiable pairing of protein sequences using soft scores
par: Lupo, Umberto, et autres
Publié: (2024)
par: Lupo, Umberto, et autres
Publié: (2024)
Evaluating representation learning on the protein structure universe
par: Jamasb, Arian R., et autres
Publié: (2024)
par: Jamasb, Arian R., et autres
Publié: (2024)
CBTOPE2: An improved method for predicting of conformational B-cell epitopes in an antigen from its primary sequence
par: Pandey, Anupma, et autres
Publié: (2025)
par: Pandey, Anupma, et autres
Publié: (2025)
Multiscale differential geometry learning for protein flexibility analysis
par: Feng, Hongsong, et autres
Publié: (2024)
par: Feng, Hongsong, et autres
Publié: (2024)
Aptamer-protein interaction prediction model based on transformer
par: Yan, Zhichao, et autres
Publié: (2025)
par: Yan, Zhichao, et autres
Publié: (2025)
High fitness paths can connect proteins with low sequence overlap
par: Kantroo, Pranav, et autres
Publié: (2024)
par: Kantroo, Pranav, et autres
Publié: (2024)
CAML: Commutative algebra machine learning -- a case study on protein-ligand binding affinity prediction
par: Feng, Hongsong, et autres
Publié: (2025)
par: Feng, Hongsong, et autres
Publié: (2025)
Selection originating from protein stability/foldability: Relationships between protein folding free energy, sequence ensemble, and fitness
par: Miyazawa, Sanzo
Publié: (2016)
par: Miyazawa, Sanzo
Publié: (2016)
Predicting the binding of small molecules to proteins through invariant representation of the molecular structure
par: Beccaria, R., et autres
Publié: (2024)
par: Beccaria, R., et autres
Publié: (2024)
Assessment of scoring functions for computational models of protein-protein interfaces
par: Sumner, Jacob, et autres
Publié: (2024)
par: Sumner, Jacob, et autres
Publié: (2024)
Persistent Dirac for molecular representation
par: Wee, JunJie, et autres
Publié: (2023)
par: Wee, JunJie, et autres
Publié: (2023)
In silico bioactivity prediction of proteins interacting with graphene-based nanomaterials guides rational design of biosensor
par: Ye, Jing, et autres
Publié: (2024)
par: Ye, Jing, et autres
Publié: (2024)
Proteins with alternative folds reveal blind spots in AlphaFold-based protein structure prediction
par: Chakravarty, Devlina, et autres
Publié: (2024)
par: Chakravarty, Devlina, et autres
Publié: (2024)
Learning to engineer protein flexibility
par: Kouba, Petr, et autres
Publié: (2024)
par: Kouba, Petr, et autres
Publié: (2024)
The standard coil or globule phases cannot describe the denatured state of structured proteins and intrinsically disordered proteins
par: Righini, F., et autres
Publié: (2025)
par: Righini, F., et autres
Publié: (2025)
De novo design of protein binders targeting the human sweet taste receptor as potential sweet proteins
par: Ding, Saisai, et autres
Publié: (2026)
par: Ding, Saisai, et autres
Publié: (2026)
TopoQA: a topological deep learning-based approach for protein complex structure interface quality assessment
par: Han, Bingqing, et autres
Publié: (2024)
par: Han, Bingqing, et autres
Publié: (2024)
A universal phase-plane model for in vivo protein aggregation
par: Cotton, Matthew W., et autres
Publié: (2025)
par: Cotton, Matthew W., et autres
Publié: (2025)
The role of topology on protein thermal stability
par: Especial, João N. C., et autres
Publié: (2025)
par: Especial, João N. C., et autres
Publié: (2025)
Computational design of intrinsically disordered proteins
par: Tesei, Giulio, et autres
Publié: (2025)
par: Tesei, Giulio, et autres
Publié: (2025)
Diffusion on language model encodings for protein sequence generation
par: Meshchaninov, Viacheslav, et autres
Publié: (2024)
par: Meshchaninov, Viacheslav, et autres
Publié: (2024)
Sequence-based protein-protein interaction prediction and its applications in drug discovery
par: Charih, François, et autres
Publié: (2025)
par: Charih, François, et autres
Publié: (2025)
A review of DNA restriction-free overlapping sequence cloning techniques for synthetic biology
par: Bomfiglio, Isabella Frighetto, et autres
Publié: (2025)
par: Bomfiglio, Isabella Frighetto, et autres
Publié: (2025)
Controlled protein synthesis and spatial organisation in microfluidic environments
par: Gaizauskaite, Aukse, et autres
Publié: (2025)
par: Gaizauskaite, Aukse, et autres
Publié: (2025)
Integrative modelling of protein-glycan interactions with HADDOCK3
par: Reys, Victor, et autres
Publié: (2026)
par: Reys, Victor, et autres
Publié: (2026)
Canonicalization of the E value from BLAST similarity search -- dissimilarity measure and distance function for a metric space of protein sequences
par: Mao, Boryeu
Publié: (2025)
par: Mao, Boryeu
Publié: (2025)
Fold-switching proteins push the boundaries of conformational ensemble prediction
par: Lee, Myeongsang, et autres
Publié: (2026)
par: Lee, Myeongsang, et autres
Publié: (2026)
Physical principles of building protein megacomplexes in a crowded milieu
par: Wang, Jiayi, et autres
Publié: (2026)
par: Wang, Jiayi, et autres
Publié: (2026)
Persistent local Laplacian prediction of protein-ligand binding affinities
par: Liu, Jian, et autres
Publié: (2026)
par: Liu, Jian, et autres
Publié: (2026)
Impact of phylogeny on structural contact inference from protein sequence data
par: Dietler, Nicola, et autres
Publié: (2022)
par: Dietler, Nicola, et autres
Publié: (2022)
Documents similaires
-
Predicting protein folding dynamics using sequence information
par: Galpern, Ezequiel A., et autres
Publié: (2025) -
ProteinGuide: On-the-fly property guidance for protein sequence generative models
par: Xiong, Junhao, et autres
Publié: (2025) -
From sequence to protein structure and conformational dynamics with AI/ML
par: Ille, Alexander M., et autres
Publié: (2025) -
Inferring protein folding mechanisms from natural sequence diversity
par: Galpern, Ezequiel A., et autres
Publié: (2024) -
Towards deep learning sequence-structure co-generation for protein design
par: Wang, Chentong, et autres
Publié: (2024)