Relative knot probabilities in confined lattice polygons
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arXiv
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| Natura: | Preprint |
| Pubblicazione: |
2025
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| _version_ | 1866929759090376704 |
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| author | van Rensburg, EJ Janse Orlandini, E Tesi, MC |
| author_facet | van Rensburg, EJ Janse Orlandini, E Tesi, MC |
| contents | In this paper we examine the relative knotting probabilities in a lattice model of ring polymers confined in a cavity. The model is of a lattice knot of size $n$ in the cubic lattice, confined to a cube of side-length $L$ and with volume $V=(L{+}1)^3$ sites. We use Monte Carlo algorithms to approximately enumerate the number of conformations of lattice knots in the confining cube. If $p_{n,L}(K)$ is the number of conformations of a lattice polygon of length $n$ and knot type $K$ in a cube of volume $L^3$, then the relative knotting probability of a lattice polygon to have knot type $K$, relative to the probability that the polygon is the unknot (the trivial knot, denoted by $0_1$), is $ρ_{n,L}(K/0_1) = p_{n,L}(K)/p_{n,L}(0_1)$. We determine $ρ_{n,L}(K/0_1)$ for various knot types $K$ up to six crossing knots. Our data show that these relative knotting probabilities are small so that the model is dominated by lattice polygons of knot type the unknot. Moreover, if the concentration of the monomers of the lattice knot is $φ= n/V$, then the relative knot probability increases with $φ$ along a curve that flattens as the Hamiltonian state is approached. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2501_08835 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Relative knot probabilities in confined lattice polygons van Rensburg, EJ Janse Orlandini, E Tesi, MC Soft Condensed Matter Other Condensed Matter Geometric Topology 82B41, 82B23, 65C05 In this paper we examine the relative knotting probabilities in a lattice model of ring polymers confined in a cavity. The model is of a lattice knot of size $n$ in the cubic lattice, confined to a cube of side-length $L$ and with volume $V=(L{+}1)^3$ sites. We use Monte Carlo algorithms to approximately enumerate the number of conformations of lattice knots in the confining cube. If $p_{n,L}(K)$ is the number of conformations of a lattice polygon of length $n$ and knot type $K$ in a cube of volume $L^3$, then the relative knotting probability of a lattice polygon to have knot type $K$, relative to the probability that the polygon is the unknot (the trivial knot, denoted by $0_1$), is $ρ_{n,L}(K/0_1) = p_{n,L}(K)/p_{n,L}(0_1)$. We determine $ρ_{n,L}(K/0_1)$ for various knot types $K$ up to six crossing knots. Our data show that these relative knotting probabilities are small so that the model is dominated by lattice polygons of knot type the unknot. Moreover, if the concentration of the monomers of the lattice knot is $φ= n/V$, then the relative knot probability increases with $φ$ along a curve that flattens as the Hamiltonian state is approached. |
| title | Relative knot probabilities in confined lattice polygons |
| topic | Soft Condensed Matter Other Condensed Matter Geometric Topology 82B41, 82B23, 65C05 |
| url | https://arxiv.org/abs/2501.08835 |