Making mathematical online resources FAIR: at the example of small phylogenetic trees
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arXiv
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| Main Authors: | , , , |
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| Format: | Preprint |
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2025
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| _version_ | 1866912692219936768 |
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| author | Bacher, Tabea Garrote-López, Marina Görgen, Christiane Neubert, Marius J. |
| author_facet | Bacher, Tabea Garrote-López, Marina Görgen, Christiane Neubert, Marius J. |
| contents | We report on the process of taking an early 2000's mathematical library, the Small Phylogenetic Trees, and transforming it into a FAIR, modern, and sustainable repository for data from algebraic phylogenetics. This process is based on a three-fold strategy: (1) writing a software package which enables the user to reproduce results of the database; (2) setting up a user-friendly new website with cross links to theoretical publications, code snippets, and serialized output of computations; and (3) all-the-while documenting the steps we take in order to derive lessons learned which may be generalised to other such projects. This paper addresses (3). (1) is found in https://docs.oscar-system.org/dev/Experimental/AlgebraicStatistics/phylogenetics, and (2) is located at https://algebraicphylogenetics.org. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2501_10823 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Making mathematical online resources FAIR: at the example of small phylogenetic trees Bacher, Tabea Garrote-López, Marina Görgen, Christiane Neubert, Marius J. History and Overview Populations and Evolution We report on the process of taking an early 2000's mathematical library, the Small Phylogenetic Trees, and transforming it into a FAIR, modern, and sustainable repository for data from algebraic phylogenetics. This process is based on a three-fold strategy: (1) writing a software package which enables the user to reproduce results of the database; (2) setting up a user-friendly new website with cross links to theoretical publications, code snippets, and serialized output of computations; and (3) all-the-while documenting the steps we take in order to derive lessons learned which may be generalised to other such projects. This paper addresses (3). (1) is found in https://docs.oscar-system.org/dev/Experimental/AlgebraicStatistics/phylogenetics, and (2) is located at https://algebraicphylogenetics.org. |
| title | Making mathematical online resources FAIR: at the example of small phylogenetic trees |
| topic | History and Overview Populations and Evolution |
| url | https://arxiv.org/abs/2501.10823 |