Spontaneous spatial sorting by cell shape in growing colonies of rod-like bacteria

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Main Authors: Ratman, Mateusz, Nuñez, Jimmy Gonzalez, Beller, Daniel A.
Format: Preprint
Published: 2025
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author Ratman, Mateusz
Nuñez, Jimmy Gonzalez
Beller, Daniel A.
author_facet Ratman, Mateusz
Nuñez, Jimmy Gonzalez
Beller, Daniel A.
contents Mechanical interactions among cells in a growing microbial colony can significantly influence the colony's spatial genetic structure and, thus, evolutionary outcomes such as the fates of rare mutations. Here, we computationally investigate how this spatial genetic structure changes as a result of heritable phenotypic variations in cell shape. By modeling rod-like bacterial cells as lengthening and dividing circo-rectangles in a 2D Brownian dynamics framework, we simulate the growth of a colony containing two populations with different aspect ratios. Compared to monodisperse colonies, such bidisperse colonies exhibit diminished intermixing between sub-populations when the less elongated cells are too short to nematically order, instead forming large clusters. We find that the cells with longer aspect ratio gradually segregate to the colony periphery. We present evidence that this demixing is related to nematic order in the bulk and to active nematic mixing dynamics near the periphery. These findings are qualitatively robust across different growth rate protocols and initial conditions. Because the periphery is often an advantageous position when nutrients are limited, our results suggest a possible evolutionary selective pressure of mechanical origin that favors large cell aspect ratio.
format Preprint
id arxiv_https___arxiv_org_abs_2501_11177
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Spontaneous spatial sorting by cell shape in growing colonies of rod-like bacteria
Ratman, Mateusz
Nuñez, Jimmy Gonzalez
Beller, Daniel A.
Soft Condensed Matter
Populations and Evolution
Mechanical interactions among cells in a growing microbial colony can significantly influence the colony's spatial genetic structure and, thus, evolutionary outcomes such as the fates of rare mutations. Here, we computationally investigate how this spatial genetic structure changes as a result of heritable phenotypic variations in cell shape. By modeling rod-like bacterial cells as lengthening and dividing circo-rectangles in a 2D Brownian dynamics framework, we simulate the growth of a colony containing two populations with different aspect ratios. Compared to monodisperse colonies, such bidisperse colonies exhibit diminished intermixing between sub-populations when the less elongated cells are too short to nematically order, instead forming large clusters. We find that the cells with longer aspect ratio gradually segregate to the colony periphery. We present evidence that this demixing is related to nematic order in the bulk and to active nematic mixing dynamics near the periphery. These findings are qualitatively robust across different growth rate protocols and initial conditions. Because the periphery is often an advantageous position when nutrients are limited, our results suggest a possible evolutionary selective pressure of mechanical origin that favors large cell aspect ratio.
title Spontaneous spatial sorting by cell shape in growing colonies of rod-like bacteria
topic Soft Condensed Matter
Populations and Evolution
url https://arxiv.org/abs/2501.11177