Cover Image

Hypergraph Representations of scRNA-seq Data for Improved Clustering with Random Walks

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	He, Wan, Bolnick, Daniel I., Scarpino, Samuel V., Eliassi-Rad, Tina
Format:	Preprint
Published:	2025
Subjects:	Quantitative Methods Genomics Applications Machine Learning
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Simultaneously Infer Cell Pseudotime,Velocity Field and Gene Interaction from Multi-Branch scRNA-seq Data with scPN
by: Zhou, Zhen, et al.
Published: (2024)

A Statistical Framework for Co-Mediators of Zero-Inflated Single-Cell RNA-Seq Data
by: Ahn, Seungjun, et al.
Published: (2025)

The Multivariate SEM-PGS Model: Using Polygenic Scores to Investigate Cross-Trait Genetic Nurture and Assortative Mating
by: Lyu, Xuanyu, et al.
Published: (2025)

Detecting gene-environment interactions to guide personalized intervention: boosting distributional regression for polygenic scores
by: Wu, Qiong, et al.
Published: (2025)

Optimizing Prognostic Biomarker Discovery in Pancreatic Cancer Through Hybrid Ensemble Feature Selection and Multi-Omics Data
by: Zobolas, John, et al.
Published: (2025)

MIXALIME: MIXture models for ALlelic IMbalance Estimation in high-throughput sequencing data
by: Meshcheryakov, Georgy, et al.
Published: (2023)

Geometric coherence of single-cell CRISPR perturbations reveals regulatory architecture and predicts cellular stress
by: Raju, Prashant C.
Published: (2026)

Mixed Models with Multiple Instance Learning
by: Engelmann, Jan P., et al.
Published: (2023)

A Misclassification Network-Based Method for Comparative Genomic Analysis
by: He, Wan, et al.
Published: (2024)

High-dimensional Many-to-many-to-many Mediation Analysis
by: Nguyen, Tien Dat, et al.
Published: (2026)

Penalized Principal Component Analysis Using Smoothing
by: Hurwitz, Rebecca M., et al.
Published: (2023)

Integrative analysis of ATAC-seq and RNA-seq for cells infected by human T-cell leukemia virus type 1
by: Tanaka, Azusa, et al.
Published: (2023)

Donor-Aware scRNA-seq Benchmarks for IBD Classification
by: Muhire, Jonathan
Published: (2026)

Harnessing the Potential of Spatial Statistics for Spatial Omics Data with pasta
by: Emons, Martin, et al.
Published: (2024)

scDiffusion: conditional generation of high-quality single-cell data using diffusion model
by: Luo, Erpai, et al.
Published: (2024)

scMRDR: A scalable and flexible framework for unpaired single-cell multi-omics data integration
by: Sun, Jianle, et al.
Published: (2025)

Mix-Geneformer: Unified Representation Learning for Human and Mouse scRNA-seq Data
by: Nishio, Yuki, et al.
Published: (2025)

Neural Population Decoding and Imbalanced Multi-Omic Datasets For Cancer Subtype Diagnosis
by: Kent, Charles Theodore, et al.
Published: (2024)

Microbial and Viral Ecology Analysis for Metagenomic Data
by: Kosmopoulos, James C., et al.
Published: (2024)

Learning collective multi-cellular dynamics from temporal scRNA-seq via a transformer-enhanced Neural SDE
by: Jiang, Qi, et al.
Published: (2025)

scX: A user-friendly tool for scRNA-seq exploration
by: Waichman, Tomás Vega, et al.
Published: (2023)

Integrating Dynamical Systems Modeling with Spatiotemporal scRNA-seq Data Analysis
by: Zhang, Zhenyi, et al.
Published: (2025)

Bipartite Graph Attention-based Clustering for Large-scale scRNA-seq Data
by: Liang, Zhuomin, et al.
Published: (2026)

Is your data alignable? Principled and interpretable alignability testing and integration of single-cell data
by: Ma, Rong, et al.
Published: (2023)

Multimodal Spatial Omics: From Data Acquisition to Computational Integration
by: Isik, Esra Busra, et al.
Published: (2026)

BMFM-RNA: whole-cell expression decoding improves transcriptomic foundation models
by: Danziger, Michael M., et al.
Published: (2025)

MARADONER: Motif Activity Response Analysis Done Right
by: Meshcheryakov, Georgy, et al.
Published: (2026)

pHapCompass: Probabilistic Assembly and Uncertainty Quantification of Polyploid Haplotype Phase
by: Hosseini, Marjan, et al.
Published: (2025)

Fine-tuning the ESM2 protein language model to understand the functional impact of missense variants
by: Saadat, Ali, et al.
Published: (2024)

MotifbreakR v2: extended capability and database integration
by: Coetzee, Simon G., et al.
Published: (2024)

DNA Language Model and Interpretable Graph Neural Network Identify Genes and Pathways Involved in Rare Diseases
by: Saadat, Ali, et al.
Published: (2024)

Methylation Operation Wizard (MeOW): Identification of differentially methylated regions in long-read sequencing data
by: Zalusky, Miranda PG, et al.
Published: (2024)

Deciphering regulatory architectures from synthetic single-cell expression patterns
by: Pan, Rosalind Wenshan, et al.
Published: (2024)

Objectively Evaluating the Reliability of Cell Type Annotation Using LLM-Based Strategies
by: Ye, Wenjin, et al.
Published: (2024)

Proteome-wide prediction of mode of inheritance and molecular mechanism underlying genetic diseases using structural interactomics
by: Saadat, Ali, et al.
Published: (2024)

RawHash2: Mapping Raw Nanopore Signals Using Hash-Based Seeding and Adaptive Quantization
by: Firtina, Can, et al.
Published: (2023)

RawAlign: Accurate, Fast, and Scalable Raw Nanopore Signal Mapping via Combining Seeding and Alignment
by: Lindegger, Joël, et al.
Published: (2023)

DiMA: Sequence Diversity Dynamics Analyser for Viruses
by: Tharanga, Shan, et al.
Published: (2022)

CIBRA identifies genomic alterations with a system-wide impact on tumor biology
by: Lakbir, Soufyan, et al.
Published: (2024)

CEP-IP: An Explainable Framework for Cell Subpopulation Identification in Single-cell Transcriptomics
by: Wong, Kah Keng
Published: (2025)