GiantHunter: Accurate detection of giant virus in metagenomic data using reinforcement-learning and Monte Carlo tree search

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Qu, Fuchuan, Peng, Cheng, Guan, Jiaojiao, Wang, Donglin, Sun, Yanni, Shang, Jiayu
Format:	Preprint
Published:	2025
Subjects:	Genomics
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Computational approaches for virus host prediction: A review of methods and applications
by: Shang, Jiayu, et al.
Published: (2025)

Accurate and efficient protein embedding using multi-teacher distillation learning
by: Shang, Jiayu, et al.
Published: (2024)

ViralQC: A Tool for Assessing Completeness and Contamination of Predicted Viral Contigs
by: Peng, Cheng, et al.
Published: (2025)

TPMM: Three-component Posterior Mixture Model Enables Robust Inverton Detection in Low-Depth Metagenomes and Suggests Potential Viral Invertons
by: Lu, Yi, et al.
Published: (2026)

SeekRBP: Leveraging Sequence-Structure Integration with Reinforcement Learning for Receptor-Binding Protein Identification
by: Luo, Xiling, et al.
Published: (2026)

PhageMind: Generalized Strain-level Phage Host Range Prediction via Meta-learning
by: Shen, Yang, et al.
Published: (2026)

FUNGAR: a pipeline for detecting antifungal resistance mutations directly from metagenomic short reads
by: Antoniolli, Henrique RM, et al.
Published: (2026)

CoverM: Read alignment statistics for metagenomics
by: Aroney, Samuel T. N., et al.
Published: (2025)

ChloroScan: Recovering plastid genome bins from metagenomic data
by: Tong, Yuhao, et al.
Published: (2025)

AmpliconHunter2: a SIMD-Accelerated In-Silico PCR Engine
by: Howard-stone, Rye, et al.
Published: (2025)

AmpliconHunter: A Scalable Tool for PCR Amplicon Prediction from Microbiome Samples
by: Howard-Stone, Rye, et al.
Published: (2025)

An experimental sorting method for improving metagenomic data encoding
by: Pratas, Diogo, et al.
Published: (2024)

Primer C-VAE: An interpretable deep learning primer design method to detect emerging virus variants
by: Wang, Hanyu, et al.
Published: (2025)

Five-Gene Expression Formula Accurately Detects Hepatocellular Carcinoma Tumors
by: Ogholbake, Aram Ansary, et al.
Published: (2025)

Conditional Monte Carlo Tree Diffusion for Designing Cell-Type-Specific and Biologically Faithful Regulatory DNA
by: Awasthi, Animesh, et al.
Published: (2026)

BWT construction and search at the terabase scale
by: Li, Heng
Published: (2024)

Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
by: Louvel, Guillaume, et al.
Published: (2024)

NucEL: Single-Nucleotide ELECTRA-Style Genomic Pre-training for Efficient and Interpretable Representations
by: Ding, Ke, et al.
Published: (2025)

oxo-call: Documentation-grounded Skill Augmentation for Accurate Bioinformatics Command-line Generation with Large Language Models
by: Peng, Yun, et al.
Published: (2026)

Approaches to studying virus pangenome variation graphs
by: Downing, Tim
Published: (2024)

A genome-scale deep learning model to predict gene expression changes of genetic perturbations from multiplex biological networks
by: Zhan, Lingmin, et al.
Published: (2024)

A mapping-free NLP-based technique for sequence search in Nanopore long-reads
by: Strzoda, Tomasz, et al.
Published: (2024)

Integrated chloroplast genomics and whole‐genome resequencing reveals demographic history and selection signatures of black walnuts
by: Hang Ye, et al.
Published: (2025)

Uncertainty-Aware Genomic Classification of Alzheimer's Disease: A Transformer-Based Ensemble Approach with Monte Carlo Dropout
by: Jo, Taeho, et al.
Published: (2025)

Investigating DNA words and their distributions across the tree of life
by: Koilakos, Charalampos, et al.
Published: (2025)

Guide to k-mer approaches for genomics across the tree of life
by: Jenike, Katharine M., et al.
Published: (2024)

The ancestral karyotype of the Heliantheae Alliance, herbicide resistance, and human allergens: Insights from the genomes of common and giant ragweed
by: Martin Laforest, et al.
Published: (2024)

A step toward a reinforcement learning de novo genome assembler
by: Padovani, Kleber, et al.
Published: (2021)

Machine learning‐based research of new refractory high‐entropy alloys using guided multiobjectives search strategy
by: Gang Xu, et al.
Published: (2025)

HEK-Omics: The promise of omics to optimize HEK293 for recombinant adeno-associated virus (rAAV) gene therapy manufacturing
by: Gurazada, Sai Guna Ranjan, et al.
Published: (2024)

A selective review of recent developments in spatially variable gene detection for spatial transcriptomics
by: Adhikari, Sikta Das, et al.
Published: (2023)

DNAMotifTokenizer: Towards Biologically Informed Tokenization of Genomic Sequences
by: Zhou, Xiaoxiao, et al.
Published: (2025)

TemporalPaD: a reinforcement-learning framework for temporal feature representation and dimension reduction
by: Mu, Xuechen, et al.
Published: (2024)

Disentangling Interpretable Factors with Supervised Independent Subspace Principal Component Analysis
by: Su, Jiayu, et al.
Published: (2024)

AMRScan: A hybrid R and Nextflow toolkit for rapid antimicrobial resistance gene detection from sequencing data
by: Lai, Kaitao
Published: (2025)

Identifying genes associated with phenotypes using machine and deep learning
by: Muneeb, Muhammad, et al.
Published: (2026)

Improving spliced alignment by modeling splice sites with deep learning
by: Yang, Siying, et al.
Published: (2025)

Molecular mechanisms associated with rootstock–scion interactions in rubber trees
by: Wanderson Lima Cunha, et al.
Published: (2025)

A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
by: Davies, Billie E, et al.
Published: (2026)

Leveraging genomic deep learning models for the prediction of non-coding variant effects
by: Kathail, Pooja, et al.
Published: (2024)