Molecular Fingerprints Are Strong Models for Peptide Function Prediction
Fuente:
arXiv
Guardado en:
| Autores principales: | Adamczyk, Jakub, Ludynia, Piotr, Czech, Wojciech |
|---|---|
| Formato: | Preprint |
| Publicado: |
2025
|
| Materias: | |
| Acceso en línea: | |
| Etiquetas: |
Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
|
Ejemplares similares
Molecular Fingerprints Are Strong Models for Peptide Function Prediction
por: Adamczyk, Jakub, et al.
Publicado: (2026)
por: Adamczyk, Jakub, et al.
Publicado: (2026)
Molecular Topological Profile (MOLTOP) -- Simple and Strong Baseline for Molecular Graph Classification
por: Adamczyk, Jakub, et al.
Publicado: (2024)
por: Adamczyk, Jakub, et al.
Publicado: (2024)
Addressing Model Overcomplexity in Drug-Drug Interaction Prediction With Molecular Fingerprints
por: Gil-Sorribes, Manel, et al.
Publicado: (2025)
por: Gil-Sorribes, Manel, et al.
Publicado: (2025)
Expanding Chemical Representation with k-mers and Fragment-based Fingerprints for Molecular Fingerprinting
por: Ali, Sarwan, et al.
Publicado: (2024)
por: Ali, Sarwan, et al.
Publicado: (2024)
Scikit-fingerprints: easy and efficient computation of molecular fingerprints in Python
por: Adamczyk, Jakub, et al.
Publicado: (2024)
por: Adamczyk, Jakub, et al.
Publicado: (2024)
HELM-BERT: A Transformer for Medium-sized Peptide Property Prediction
por: Lee, Seungeon, et al.
Publicado: (2025)
por: Lee, Seungeon, et al.
Publicado: (2025)
Peptide Sequencing Via Protein Language Models
por: Pham, Thuong Le Hoai, et al.
Publicado: (2024)
por: Pham, Thuong Le Hoai, et al.
Publicado: (2024)
Curriculum Learning for Biological Sequence Prediction: The Case of De Novo Peptide Sequencing
por: Zhang, Xiang, et al.
Publicado: (2025)
por: Zhang, Xiang, et al.
Publicado: (2025)
Towards Faster and More Compact Foundation Models for Molecular Property Prediction
por: Ghunaim, Yasir, et al.
Publicado: (2025)
por: Ghunaim, Yasir, et al.
Publicado: (2025)
Benchmarking Pretrained Molecular Embedding Models For Molecular Representation Learning
por: Praski, Mateusz, et al.
Publicado: (2025)
por: Praski, Mateusz, et al.
Publicado: (2025)
Insights Into the Inner Workings of Transformer Models for Protein Function Prediction
por: Wenzel, Markus, et al.
Publicado: (2023)
por: Wenzel, Markus, et al.
Publicado: (2023)
Morphology-Aware Peptide Discovery via Masked Conditional Generative Modeling
por: Costa, Nuno, et al.
Publicado: (2025)
por: Costa, Nuno, et al.
Publicado: (2025)
Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling
por: Zhou, Xiangxin, et al.
Publicado: (2025)
por: Zhou, Xiangxin, et al.
Publicado: (2025)
Open-Source Protein Language Models for Function Prediction and Protein Design
por: Pandi, Shivasankaran Vanaja, et al.
Publicado: (2024)
por: Pandi, Shivasankaran Vanaja, et al.
Publicado: (2024)
Learning Hierarchical Interaction for Accurate Molecular Property Prediction
por: Hong, Huiyang, et al.
Publicado: (2025)
por: Hong, Huiyang, et al.
Publicado: (2025)
Multimodal Large Language Models for Inverse Molecular Design with Retrosynthetic Planning
por: Liu, Gang, et al.
Publicado: (2024)
por: Liu, Gang, et al.
Publicado: (2024)
RapidDock: Unlocking Proteome-scale Molecular Docking
por: Powalski, Rafał, et al.
Publicado: (2024)
por: Powalski, Rafał, et al.
Publicado: (2024)
ApisTox: a new benchmark dataset for the classification of small molecules toxicity on honey bees
por: Adamczyk, Jakub, et al.
Publicado: (2024)
por: Adamczyk, Jakub, et al.
Publicado: (2024)
DISPROTBENCH: Uncovering the Functional Limits of Protein Structure Prediction Models in Intrinsically Disordered Regions
por: Zeng, Xinyue, et al.
Publicado: (2025)
por: Zeng, Xinyue, et al.
Publicado: (2025)
Molecular Diffusion Models with Virtual Receptors
por: Halfon, Matan, et al.
Publicado: (2024)
por: Halfon, Matan, et al.
Publicado: (2024)
Generative Modeling of Molecular Dynamics Trajectories
por: Jing, Bowen, et al.
Publicado: (2024)
por: Jing, Bowen, et al.
Publicado: (2024)
Interpretable Enzyme Function Prediction via Residue-Level Detection
por: Yang, Zhao, et al.
Publicado: (2025)
por: Yang, Zhao, et al.
Publicado: (2025)
Disentangling the Complex Multiplexed DIA Spectra in De Novo Peptide Sequencing
por: Ma, Zheng, et al.
Publicado: (2024)
por: Ma, Zheng, et al.
Publicado: (2024)
Minimal-Action Discrete Schrödinger Bridge Matching for Peptide Sequence Design
por: Goel, Shrey, et al.
Publicado: (2026)
por: Goel, Shrey, et al.
Publicado: (2026)
Investigating Graph Neural Networks and Classical Feature-Extraction Techniques in Activity-Cliff and Molecular Property Prediction
por: Dablander, Markus
Publicado: (2024)
por: Dablander, Markus
Publicado: (2024)
MarS-FM: Generative Modeling of Molecular Dynamics via Markov State Models
por: Kapuśniak, Kacper, et al.
Publicado: (2025)
por: Kapuśniak, Kacper, et al.
Publicado: (2025)
PharMolixFM: All-Atom Foundation Models for Molecular Modeling and Generation
por: Luo, Yizhen, et al.
Publicado: (2025)
por: Luo, Yizhen, et al.
Publicado: (2025)
Multiview Random Vector Functional Link Network for Predicting DNA-Binding Proteins
por: Quadir, A., et al.
Publicado: (2024)
por: Quadir, A., et al.
Publicado: (2024)
Cross-Chirality Generalization by Axial Vectors for Hetero-Chiral Protein-Peptide Interaction Design
por: Yang, Ziyi, et al.
Publicado: (2026)
por: Yang, Ziyi, et al.
Publicado: (2026)
Accurate and Efficient Structural Ensemble Generation of Macrocyclic Peptides using Internal Coordinate Diffusion
por: Grambow, Colin A., et al.
Publicado: (2023)
por: Grambow, Colin A., et al.
Publicado: (2023)
3D-Mol: A Novel Contrastive Learning Framework for Molecular Property Prediction with 3D Information
por: Kuang, Taojie, et al.
Publicado: (2023)
por: Kuang, Taojie, et al.
Publicado: (2023)
Unveiling Scaling Behaviors in Molecular Language Models: Effects of Model Size, Data, and Representation
por: Xu, Dong, et al.
Publicado: (2026)
por: Xu, Dong, et al.
Publicado: (2026)
Two-Stage Pretraining for Molecular Property Prediction in the Wild
por: Wijaya, Kevin Tirta, et al.
Publicado: (2024)
por: Wijaya, Kevin Tirta, et al.
Publicado: (2024)
Towards Efficient Molecular Property Optimization with Graph Energy Based Models
por: Miglior, Luca, et al.
Publicado: (2025)
por: Miglior, Luca, et al.
Publicado: (2025)
Multi-Objective Latent Space Optimization of Generative Molecular Design Models
por: Abeer, A N M Nafiz, et al.
Publicado: (2022)
por: Abeer, A N M Nafiz, et al.
Publicado: (2022)
QuickBind: A Light-Weight And Interpretable Molecular Docking Model
por: Treyde, Wojtek, et al.
Publicado: (2024)
por: Treyde, Wojtek, et al.
Publicado: (2024)
Accelerating Inference in Molecular Diffusion Models with Latent Representations of Protein Structure
por: Dunn, Ian, et al.
Publicado: (2023)
por: Dunn, Ian, et al.
Publicado: (2023)
Multi-modal Representation Learning Enables Accurate Protein Function Prediction in Low-Data Setting
por: Ünsal, Serbülent, et al.
Publicado: (2024)
por: Ünsal, Serbülent, et al.
Publicado: (2024)
Beyond Atoms: Enhancing Molecular Pretrained Representations with 3D Space Modeling
por: Lu, Shuqi, et al.
Publicado: (2025)
por: Lu, Shuqi, et al.
Publicado: (2025)
DecompOpt: Controllable and Decomposed Diffusion Models for Structure-based Molecular Optimization
por: Zhou, Xiangxin, et al.
Publicado: (2024)
por: Zhou, Xiangxin, et al.
Publicado: (2024)
Ejemplares similares
-
Molecular Fingerprints Are Strong Models for Peptide Function Prediction
por: Adamczyk, Jakub, et al.
Publicado: (2026) -
Molecular Topological Profile (MOLTOP) -- Simple and Strong Baseline for Molecular Graph Classification
por: Adamczyk, Jakub, et al.
Publicado: (2024) -
Addressing Model Overcomplexity in Drug-Drug Interaction Prediction With Molecular Fingerprints
por: Gil-Sorribes, Manel, et al.
Publicado: (2025) -
Expanding Chemical Representation with k-mers and Fragment-based Fingerprints for Molecular Fingerprinting
por: Ali, Sarwan, et al.
Publicado: (2024) -
Scikit-fingerprints: easy and efficient computation of molecular fingerprints in Python
por: Adamczyk, Jakub, et al.
Publicado: (2024)