MirLibSpark: A Scalable NGS Plant MicroRNA Prediction Pipeline for Multi-Library Functional Annotation
Fuente:
arXiv
Saved in:
| Main Authors: | Wu, Chao-Jung, Remita, Amine M., Diallo, Abdoulaye Baniré |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Statistical Linear Models in Virus Genomic Alignment-free Classification: Application to Hepatitis C Viruses
by: Remita, Amine M., et al.
Published: (2019)
by: Remita, Amine M., et al.
Published: (2019)
gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs
by: Schmidt, Bertil, et al.
Published: (2024)
by: Schmidt, Bertil, et al.
Published: (2024)
An Asynchronous Distributed-Memory Parallel Algorithm for k-mer Counting
by: Hati, Souvadra, et al.
Published: (2025)
by: Hati, Souvadra, et al.
Published: (2025)
High-Performance Sorting-Based k-mer Counting in Distributed Memory with Flexible Hybrid Parallelism
by: Li, Yifan, et al.
Published: (2024)
by: Li, Yifan, et al.
Published: (2024)
PanDelos-plus: A parallel algorithm for computing sequence homology in pangenomic analysis
by: Colli, Simone, et al.
Published: (2025)
by: Colli, Simone, et al.
Published: (2025)
NMP-PaK: Near-Memory Processing Acceleration of Scalable De Novo Genome Assembly
by: Kim, Heewoo, et al.
Published: (2025)
by: Kim, Heewoo, et al.
Published: (2025)
Offloading tracing for real-time systems using a scalable cloud infrastructure
by: Schmidt, David Jannis, et al.
Published: (2025)
by: Schmidt, David Jannis, et al.
Published: (2025)
SparkAttention: High-Performance Multi-Head Attention for Large Models on Volta GPU Architecture
by: Xu, Youxuan, et al.
Published: (2025)
by: Xu, Youxuan, et al.
Published: (2025)
Hybrid Quantum-HPC Middleware Systems for Adaptive Resource, Workload and Task Management
by: Mantha, Pradeep, et al.
Published: (2026)
by: Mantha, Pradeep, et al.
Published: (2026)
Risk Management for Distributed Arbitrage Systems: Integrating Artificial Intelligence
by: Hazarika, Akaash Vishal, et al.
Published: (2025)
by: Hazarika, Akaash Vishal, et al.
Published: (2025)
MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing
by: Ghiasi, Nika Mansouri, et al.
Published: (2024)
by: Ghiasi, Nika Mansouri, et al.
Published: (2024)
TorchGWAS : GPU-accelerated GWAS for thousands of quantitative phenotypes
by: Zhao, Xingzhong, et al.
Published: (2026)
by: Zhao, Xingzhong, et al.
Published: (2026)
SAGe: A Lightweight Algorithm-Architecture Co-Design for Mitigating the Data Preparation Bottleneck in Large-Scale Genome Sequence Analysis
by: Ghiasi, Nika Mansouri, et al.
Published: (2025)
by: Ghiasi, Nika Mansouri, et al.
Published: (2025)
Lock-free de Bruijn graph
by: Górniak, Daniel, et al.
Published: (2024)
by: Górniak, Daniel, et al.
Published: (2024)
RUBICON: A Framework for Designing Efficient Deep Learning-Based Genomic Basecallers
by: Singh, Gagandeep, et al.
Published: (2022)
by: Singh, Gagandeep, et al.
Published: (2022)
CUNQA: a Distributed Quantum Computing emulator for HPC
by: Vázquez-Pérez, Jorge, et al.
Published: (2025)
by: Vázquez-Pérez, Jorge, et al.
Published: (2025)
A Green Multi-Attribute Client Selection for Over-The-Air Federated Learning: A Grey-Wolf-Optimizer Approach
by: Driss, Maryam Ben, et al.
Published: (2024)
by: Driss, Maryam Ben, et al.
Published: (2024)
I/O in Machine Learning Applications on HPC Systems: A 360-degree Survey
by: Lewis, Noah, et al.
Published: (2024)
by: Lewis, Noah, et al.
Published: (2024)
A Full Compression Pipeline for Green Federated Learning in Communication-Constrained Environments
by: Colybes, Elouan, et al.
Published: (2026)
by: Colybes, Elouan, et al.
Published: (2026)
Hector: An Efficient Programming and Compilation Framework for Implementing Relational Graph Neural Networks in GPU Architectures
by: Wu, Kun, et al.
Published: (2023)
by: Wu, Kun, et al.
Published: (2023)
GVE-LPA: Fast Label Propagation Algorithm (LPA) for Community Detection in Shared Memory Setting
by: Sahu, Subhajit
Published: (2023)
by: Sahu, Subhajit
Published: (2023)
An Incrementally Expanding Approach for Updating PageRank on Dynamic Graphs
by: Sahu, Subhajit
Published: (2024)
by: Sahu, Subhajit
Published: (2024)
DF* PageRank: Improved Incrementally Expanding Approaches for Updating PageRank on Dynamic Graphs
by: Sahu, Subhajit
Published: (2024)
by: Sahu, Subhajit
Published: (2024)
GVE-Louvain: Fast Louvain Algorithm for Community Detection in Shared Memory Setting
by: Sahu, Subhajit
Published: (2023)
by: Sahu, Subhajit
Published: (2023)
GVE-Leiden: Fast Leiden Algorithm for Community Detection in Shared Memory Setting
by: Sahu, Subhajit
Published: (2023)
by: Sahu, Subhajit
Published: (2023)
Lock-Free Computation of PageRank in Dynamic Graphs
by: Sahu, Subhajit
Published: (2024)
by: Sahu, Subhajit
Published: (2024)
Aergia: Leveraging Heterogeneity in Federated Learning Systems
by: Cox, Bart, et al.
Published: (2022)
by: Cox, Bart, et al.
Published: (2022)
Roadmap for Edge AI: A Dagstuhl Perspective
by: Ding, Aaron Yi, et al.
Published: (2021)
by: Ding, Aaron Yi, et al.
Published: (2021)
Towards Optimal Heterogeneous Client Sampling in Multi-Model Federated Learning
by: Zhang, Haoran, et al.
Published: (2025)
by: Zhang, Haoran, et al.
Published: (2025)
Parameterizing Federated Continual Learning for Reproducible Research
by: Cox, Bart, et al.
Published: (2024)
by: Cox, Bart, et al.
Published: (2024)
Asynchronous Byzantine Federated Learning
by: Cox, Bart, et al.
Published: (2024)
by: Cox, Bart, et al.
Published: (2024)
Hyper-parameter Optimization for Federated Learning with Step-wise Adaptive Mechanism
by: Saadati, Yasaman, et al.
Published: (2024)
by: Saadati, Yasaman, et al.
Published: (2024)
A Domain-Driven Design Simulator for Business Logic-Rich Microservice Systems
by: Pereira, Daniel da Palma, et al.
Published: (2026)
by: Pereira, Daniel da Palma, et al.
Published: (2026)
Training Diffusion Models with Federated Learning
by: de Goede, Matthijs, et al.
Published: (2024)
by: de Goede, Matthijs, et al.
Published: (2024)
Connecting Large Language Model Agent to High Performance Computing Resource
by: Ma, Heng, et al.
Published: (2025)
by: Ma, Heng, et al.
Published: (2025)
Quantize Once, Train Fast: Allreduce-Compatible Compression with Provable Guarantees
by: Xin, Jihao, et al.
Published: (2023)
by: Xin, Jihao, et al.
Published: (2023)
Streaming REST APIs for Large Financial Transaction Exports from Relational Databases
by: Kandiraju, Abhiram
Published: (2026)
by: Kandiraju, Abhiram
Published: (2026)
Comparison of Autoscaling Frameworks for Containerised Machine-Learning-Applications in a Local and Cloud Environment
by: Schroeder, Christian, et al.
Published: (2023)
by: Schroeder, Christian, et al.
Published: (2023)
Asynchronous Multi-Server Federated Learning for Geo-Distributed Clients
by: Zuo, Yuncong, et al.
Published: (2024)
by: Zuo, Yuncong, et al.
Published: (2024)
Chimera: Efficiently Training Large-Scale Neural Networks with Bidirectional Pipelines
by: Li, Shigang, et al.
Published: (2021)
by: Li, Shigang, et al.
Published: (2021)
Similar Items
-
Statistical Linear Models in Virus Genomic Alignment-free Classification: Application to Hepatitis C Viruses
by: Remita, Amine M., et al.
Published: (2019) -
gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs
by: Schmidt, Bertil, et al.
Published: (2024) -
An Asynchronous Distributed-Memory Parallel Algorithm for k-mer Counting
by: Hati, Souvadra, et al.
Published: (2025) -
High-Performance Sorting-Based k-mer Counting in Distributed Memory with Flexible Hybrid Parallelism
by: Li, Yifan, et al.
Published: (2024) -
PanDelos-plus: A parallel algorithm for computing sequence homology in pangenomic analysis
by: Colli, Simone, et al.
Published: (2025)