Frustration In Physiology And Molecular Medicine
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arXiv
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| Main Authors: | , , , |
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| Format: | Preprint |
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2025
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| _version_ | 1866913682690146304 |
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| author | Parra, R. Gonzalo Komives, Elizabeth A. Wolynes, Peter G. Ferreiro, Diego U. |
| author_facet | Parra, R. Gonzalo Komives, Elizabeth A. Wolynes, Peter G. Ferreiro, Diego U. |
| contents | Molecules provide the ultimate language in terms of which physiology and pathology must be understood. Myriads of proteins participate in elaborate networks of interactions and perform chemical activities coordinating the life of cells. To perform these often amazing tasks, proteins must move and we must think of them as dynamic ensembles of three dimensional structures formed first by folding the polypeptide chains so as to minimize the conflicts between the interactions of their constituent amino acids. It is apparent however that, even when completely folded, not all conflicting interactions have been resolved so the structure remains "locally frustrated". Over the last decades it has become clearer that this local frustration is not just a random accident but plays an essential part of the inner workings of protein molecules. We will review here the physical origins of the frustration concept and review evidence that local frustration is important for protein physiology, protein-protein recognition, catalysis and allostery. Also, we highlight examples showing how alterations in the local frustration patterns can be linked to distinct pathologies. Finally we explore the extensions of the impact of frustration in higher order levels of organization of systems including gene regulatory networks and the neural networks of the brain. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2502_03851 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Frustration In Physiology And Molecular Medicine Parra, R. Gonzalo Komives, Elizabeth A. Wolynes, Peter G. Ferreiro, Diego U. Biomolecules Soft Condensed Matter Biological Physics Quantitative Methods Molecules provide the ultimate language in terms of which physiology and pathology must be understood. Myriads of proteins participate in elaborate networks of interactions and perform chemical activities coordinating the life of cells. To perform these often amazing tasks, proteins must move and we must think of them as dynamic ensembles of three dimensional structures formed first by folding the polypeptide chains so as to minimize the conflicts between the interactions of their constituent amino acids. It is apparent however that, even when completely folded, not all conflicting interactions have been resolved so the structure remains "locally frustrated". Over the last decades it has become clearer that this local frustration is not just a random accident but plays an essential part of the inner workings of protein molecules. We will review here the physical origins of the frustration concept and review evidence that local frustration is important for protein physiology, protein-protein recognition, catalysis and allostery. Also, we highlight examples showing how alterations in the local frustration patterns can be linked to distinct pathologies. Finally we explore the extensions of the impact of frustration in higher order levels of organization of systems including gene regulatory networks and the neural networks of the brain. |
| title | Frustration In Physiology And Molecular Medicine |
| topic | Biomolecules Soft Condensed Matter Biological Physics Quantitative Methods |
| url | https://arxiv.org/abs/2502.03851 |