QuantumDNA: A Python Package for Analyzing Quantum Charge Dynamics in DNA and Exploring Its Biological Relevance
Fuente:
arXiv
Saved in:
| Main Authors: | Herb, Dennis, Trenti, Marco, Mantela, Marilena, Simserides, Constantinos, Ankerhold, Joachim, Rossini, Mirko |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Ultrafast excitonic dynamics in DNA: Bridging correlated quantum dynamics and sequence dependence
by: Herb, D., et al.
Published: (2024)
by: Herb, D., et al.
Published: (2024)
Visualizing Poloidal Orientation in DNA Minicircles
by: Lemos, Tony, et al.
Published: (2025)
by: Lemos, Tony, et al.
Published: (2025)
Spectroscopic approaches for studies of site-specific DNA base and backbone "breathing" using exciton-coupled dimer-labeled DNA
by: Marcus, Andrew H., et al.
Published: (2024)
by: Marcus, Andrew H., et al.
Published: (2024)
DNA Calorimetric Force Spectroscopy at Single Base Pair Resolution
by: Rissone, Paolo, et al.
Published: (2024)
by: Rissone, Paolo, et al.
Published: (2024)
Statistical method for A-RNA and B-DNA
by: Zoli, Marco
Published: (2025)
by: Zoli, Marco
Published: (2025)
Double-Strand Break Clustering: An Economical and Effective Strategy for DNA Repair
by: Chen, Junyi, et al.
Published: (2024)
by: Chen, Junyi, et al.
Published: (2024)
Tailored Error Mitigation for Single-Qubit Magnetometry
by: Resch, Miriam, et al.
Published: (2025)
by: Resch, Miriam, et al.
Published: (2025)
How to explain the sensitivity of DNA double-strand breaks yield to 125I position?
by: Ávila, Mario Enrique Alcocer, et al.
Published: (2024)
by: Ávila, Mario Enrique Alcocer, et al.
Published: (2024)
Correlating fluorescence microscopy, optical and magnetic tweezers to study single chiral biopolymers such as DNA
by: Shepherd, Jack W, et al.
Published: (2024)
by: Shepherd, Jack W, et al.
Published: (2024)
Liapunov exponent distributions and maps for multiple parameter logistic equation. Application to DNA and RNA sequences
by: Martin-Landrove, Miguel, et al.
Published: (2025)
by: Martin-Landrove, Miguel, et al.
Published: (2025)
Effect of environmental noise on charge diffusion in DNA: Towards modeling its potential epigenetic impact in live processes
by: Rossini, Mirko, et al.
Published: (2024)
by: Rossini, Mirko, et al.
Published: (2024)
Sparing of DNA irradiated with Ultra-High Dose-Rates under Physiological Oxygen and Salt conditions
by: Hahn, Marc Benjamin, et al.
Published: (2025)
by: Hahn, Marc Benjamin, et al.
Published: (2025)
Modular DNA origami-based electrochemical detection of DNA and proteins
by: Jeon, Byoung-jin, et al.
Published: (2023)
by: Jeon, Byoung-jin, et al.
Published: (2023)
ATP-Dependent Mismatch Recognition in DNA Replication Mismatch Repair
by: Zhang, Nianqin, et al.
Published: (2022)
by: Zhang, Nianqin, et al.
Published: (2022)
The Quantum Compass Mechanism in Cryptochromes
by: Chengye, Zou, et al.
Published: (2025)
by: Chengye, Zou, et al.
Published: (2025)
QMProt: A Comprehensive Dataset of Quantum Properties for Proteins
by: Sala, Laia Coronas, et al.
Published: (2025)
by: Sala, Laia Coronas, et al.
Published: (2025)
Quantum algorithm for bioinformatics to compute the similarity between proteins
by: Chagneau, Anthony, et al.
Published: (2024)
by: Chagneau, Anthony, et al.
Published: (2024)
Interface-Driven Peptide Folding: Quantum Computations on Simulated Membrane Surfaces
by: Conde-Torres, Daniel, et al.
Published: (2024)
by: Conde-Torres, Daniel, et al.
Published: (2024)
MDRefine: a Python package for refining Molecular Dynamics trajectories with experimental data
by: Gilardoni, Ivan, et al.
Published: (2024)
by: Gilardoni, Ivan, et al.
Published: (2024)
Quantum Algorithm for Protein Structure Prediction Using the Face-Centered Cubic Lattice
by: Li, Rui-Hao, et al.
Published: (2025)
by: Li, Rui-Hao, et al.
Published: (2025)
Physical Principles of Quantum Biology
by: Babcock, Nathan S., et al.
Published: (2025)
by: Babcock, Nathan S., et al.
Published: (2025)
Coarse-grained modelling of DNA-RNA hybrids
by: Ratajczyk, Eryk J., et al.
Published: (2023)
by: Ratajczyk, Eryk J., et al.
Published: (2023)
Unzipping of knotted DNA via nanopore translocation
by: Suma, Antonio, et al.
Published: (2024)
by: Suma, Antonio, et al.
Published: (2024)
Origin of Biological Homochirality by Crystallization of an RNA Precursor on a Magnetic Surface
by: Ozturk, S. Furkan, et al.
Published: (2023)
by: Ozturk, S. Furkan, et al.
Published: (2023)
Computation of Biological Conductance with Liouville Quantum Master Equation
by: Papp, Eszter, et al.
Published: (2024)
by: Papp, Eszter, et al.
Published: (2024)
Biological Insights from Integrative Modeling of Intrinsically Disordered Protein Systems
by: Liu, Zi Hao, et al.
Published: (2024)
by: Liu, Zi Hao, et al.
Published: (2024)
A Single Nucleotide Resolution Model for Large-Scale Simulations of Double Stranded DNA
by: Fosado, Y. A. G., et al.
Published: (2016)
by: Fosado, Y. A. G., et al.
Published: (2016)
Electrodynamic forces driving DNA-protein interactions at large distances
by: Faraji, E., et al.
Published: (2024)
by: Faraji, E., et al.
Published: (2024)
Target search on DNA -- effect of coiling
by: Lomholt, Michael A., et al.
Published: (2023)
by: Lomholt, Michael A., et al.
Published: (2023)
Quantum Dots as Functional Nanosystems for Enhanced Biomedical Applications
by: Biswas, Pronama, et al.
Published: (2025)
by: Biswas, Pronama, et al.
Published: (2025)
Advancements in Programmable Lipid Nanoparticles: Exploring the Four-Domain Model for Targeted Drug Delivery
by: Liu, Zhaoyu, et al.
Published: (2024)
by: Liu, Zhaoyu, et al.
Published: (2024)
cgNA+min: computation of sequence-dependent dsDNA energy-minimising minicircle configurations
by: Singh, Raushan, et al.
Published: (2024)
by: Singh, Raushan, et al.
Published: (2024)
Quantum-machine-assisted Drug Discovery
by: Zhou, Yidong, et al.
Published: (2024)
by: Zhou, Yidong, et al.
Published: (2024)
Application of Quantum Tensor Networks for Protein Classification
by: Kundu, Debarshi, et al.
Published: (2024)
by: Kundu, Debarshi, et al.
Published: (2024)
Quantum Long Short-Term Memory for Drug Discovery
by: Zhang, Liang, et al.
Published: (2024)
by: Zhang, Liang, et al.
Published: (2024)
Monte Carlo simulation of SARS-CoV-2 radiation-induced inactivation for vaccine development
by: Francis, Ziad, et al.
Published: (2020)
by: Francis, Ziad, et al.
Published: (2020)
Hybrid Quantum Generative Adversarial Networks for Molecular Simulation and Drug Discovery
by: Jain, Prateek, et al.
Published: (2022)
by: Jain, Prateek, et al.
Published: (2022)
Modulation of DNA rheology by a transcription factor that forms aging microgels
by: Hong-Minh, Amandine, et al.
Published: (2025)
by: Hong-Minh, Amandine, et al.
Published: (2025)
The onset of molecule-spanning dynamics in a multi-domain protein
by: Sohmen, Benedikt, et al.
Published: (2021)
by: Sohmen, Benedikt, et al.
Published: (2021)
Hairygami: Analysis of DNA Nanostructures' Conformational Change Driven by Functionalizable Overhangs
by: Sample, Matthew, et al.
Published: (2023)
by: Sample, Matthew, et al.
Published: (2023)
Similar Items
-
Ultrafast excitonic dynamics in DNA: Bridging correlated quantum dynamics and sequence dependence
by: Herb, D., et al.
Published: (2024) -
Visualizing Poloidal Orientation in DNA Minicircles
by: Lemos, Tony, et al.
Published: (2025) -
Spectroscopic approaches for studies of site-specific DNA base and backbone "breathing" using exciton-coupled dimer-labeled DNA
by: Marcus, Andrew H., et al.
Published: (2024) -
DNA Calorimetric Force Spectroscopy at Single Base Pair Resolution
by: Rissone, Paolo, et al.
Published: (2024) -
Statistical method for A-RNA and B-DNA
by: Zoli, Marco
Published: (2025)