Supervised Contrastive Block Disentanglement
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arXiv
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| Main Authors: | , , , , , , , , , , , , , |
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| Format: | Preprint |
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2025
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| _version_ | 1866929709863927808 |
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| author | Makino, Taro Park, Ji Won Tagasovska, Natasa Kudo, Takamasa Coelho, Paula Huetter, Jan-Christian Yao, Heming Hoeckendorf, Burkhard Leote, Ana Carolina Ra, Stephen Richmond, David Cho, Kyunghyun Regev, Aviv Lopez, Romain |
| author_facet | Makino, Taro Park, Ji Won Tagasovska, Natasa Kudo, Takamasa Coelho, Paula Huetter, Jan-Christian Yao, Heming Hoeckendorf, Burkhard Leote, Ana Carolina Ra, Stephen Richmond, David Cho, Kyunghyun Regev, Aviv Lopez, Romain |
| contents | Real-world datasets often combine data collected under different experimental conditions. This yields larger datasets, but also introduces spurious correlations that make it difficult to model the phenomena of interest. We address this by learning two embeddings to independently represent the phenomena of interest and the spurious correlations. The embedding representing the phenomena of interest is correlated with the target variable $y$, and is invariant to the environment variable $e$. In contrast, the embedding representing the spurious correlations is correlated with $e$. The invariance to $e$ is difficult to achieve on real-world datasets. Our primary contribution is an algorithm called Supervised Contrastive Block Disentanglement (SCBD) that effectively enforces this invariance. It is based purely on Supervised Contrastive Learning, and applies to real-world data better than existing approaches. We empirically validate SCBD on two challenging problems. The first problem is domain generalization, where we achieve strong performance on a synthetic dataset, as well as on Camelyon17-WILDS. We introduce a single hyperparameter $α$ to control the degree of invariance to $e$. When we increase $α$ to strengthen the degree of invariance, out-of-distribution performance improves at the expense of in-distribution performance. The second problem is batch correction, in which we apply SCBD to preserve biological signal and remove inter-well batch effects when modeling single-cell perturbations from 26 million Optical Pooled Screening images. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2502_07281 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Supervised Contrastive Block Disentanglement Makino, Taro Park, Ji Won Tagasovska, Natasa Kudo, Takamasa Coelho, Paula Huetter, Jan-Christian Yao, Heming Hoeckendorf, Burkhard Leote, Ana Carolina Ra, Stephen Richmond, David Cho, Kyunghyun Regev, Aviv Lopez, Romain Machine Learning Real-world datasets often combine data collected under different experimental conditions. This yields larger datasets, but also introduces spurious correlations that make it difficult to model the phenomena of interest. We address this by learning two embeddings to independently represent the phenomena of interest and the spurious correlations. The embedding representing the phenomena of interest is correlated with the target variable $y$, and is invariant to the environment variable $e$. In contrast, the embedding representing the spurious correlations is correlated with $e$. The invariance to $e$ is difficult to achieve on real-world datasets. Our primary contribution is an algorithm called Supervised Contrastive Block Disentanglement (SCBD) that effectively enforces this invariance. It is based purely on Supervised Contrastive Learning, and applies to real-world data better than existing approaches. We empirically validate SCBD on two challenging problems. The first problem is domain generalization, where we achieve strong performance on a synthetic dataset, as well as on Camelyon17-WILDS. We introduce a single hyperparameter $α$ to control the degree of invariance to $e$. When we increase $α$ to strengthen the degree of invariance, out-of-distribution performance improves at the expense of in-distribution performance. The second problem is batch correction, in which we apply SCBD to preserve biological signal and remove inter-well batch effects when modeling single-cell perturbations from 26 million Optical Pooled Screening images. |
| title | Supervised Contrastive Block Disentanglement |
| topic | Machine Learning |
| url | https://arxiv.org/abs/2502.07281 |