Soybean pod and seed counting in both outdoor fields and indoor laboratories using unions of deep neural networks

Fuente: arXiv
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Main Authors: Jiang, Tianyou, Shao, Mingshun, Zhang, Tianyi, Liu, Xiaoyu, Yu, Qun
Format: Preprint
Published: 2025
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author Jiang, Tianyou
Shao, Mingshun
Zhang, Tianyi
Liu, Xiaoyu
Yu, Qun
author_facet Jiang, Tianyou
Shao, Mingshun
Zhang, Tianyi
Liu, Xiaoyu
Yu, Qun
contents Automatic counting soybean pods and seeds in outdoor fields allows for rapid yield estimation before harvesting, while indoor laboratory counting offers greater accuracy. Both methods can significantly accelerate the breeding process. However, it remains challenging for accurately counting pods and seeds in outdoor fields, and there are still no accurate enough tools for counting pods and seeds in laboratories. In this study, we developed efficient deep learning models for counting soybean pods and seeds in both outdoor fields and indoor laboratories. For outdoor fields, annotating not only visible seeds but also occluded seeds makes YOLO have the ability to estimate the number of soybean seeds that are occluded. Moreover, we enhanced YOLO architecture by integrating it with HQ-SAM (YOLO-SAM), and domain adaptation techniques (YOLO-DA), to improve model robustness and generalization across soybean images taken in outdoor fields. Testing on soybean images from the outdoor field, we achieved a mean absolute error (MAE) of 6.13 for pod counting and 10.05 for seed counting. For the indoor setting, we utilized Mask-RCNN supplemented with a Swin Transformer module (Mask-RCNN-Swin), models were trained exclusively on synthetic training images generated from a small set of labeled data. This approach resulted in near-perfect accuracy, with an MAE of 1.07 for pod counting and 1.33 for seed counting across actual laboratory images from two distinct studies.
format Preprint
id arxiv_https___arxiv_org_abs_2502_15286
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Soybean pod and seed counting in both outdoor fields and indoor laboratories using unions of deep neural networks
Jiang, Tianyou
Shao, Mingshun
Zhang, Tianyi
Liu, Xiaoyu
Yu, Qun
Computer Vision and Pattern Recognition
Automatic counting soybean pods and seeds in outdoor fields allows for rapid yield estimation before harvesting, while indoor laboratory counting offers greater accuracy. Both methods can significantly accelerate the breeding process. However, it remains challenging for accurately counting pods and seeds in outdoor fields, and there are still no accurate enough tools for counting pods and seeds in laboratories. In this study, we developed efficient deep learning models for counting soybean pods and seeds in both outdoor fields and indoor laboratories. For outdoor fields, annotating not only visible seeds but also occluded seeds makes YOLO have the ability to estimate the number of soybean seeds that are occluded. Moreover, we enhanced YOLO architecture by integrating it with HQ-SAM (YOLO-SAM), and domain adaptation techniques (YOLO-DA), to improve model robustness and generalization across soybean images taken in outdoor fields. Testing on soybean images from the outdoor field, we achieved a mean absolute error (MAE) of 6.13 for pod counting and 10.05 for seed counting. For the indoor setting, we utilized Mask-RCNN supplemented with a Swin Transformer module (Mask-RCNN-Swin), models were trained exclusively on synthetic training images generated from a small set of labeled data. This approach resulted in near-perfect accuracy, with an MAE of 1.07 for pod counting and 1.33 for seed counting across actual laboratory images from two distinct studies.
title Soybean pod and seed counting in both outdoor fields and indoor laboratories using unions of deep neural networks
topic Computer Vision and Pattern Recognition
url https://arxiv.org/abs/2502.15286