LLM as GNN: Graph Vocabulary Learning for Text-Attributed Graph Foundation Models
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arXiv
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| Format: | Preprint |
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2025
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| _version_ | 1866909854977753088 |
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| author | Zhu, Xi Xue, Haochen Zhao, Ziwei Xu, Wujiang Huang, Jingyuan Guo, Minghao Wang, Qifan Zhou, Kaixiong Razzak, Imran Zhang, Yongfeng |
| author_facet | Zhu, Xi Xue, Haochen Zhao, Ziwei Xu, Wujiang Huang, Jingyuan Guo, Minghao Wang, Qifan Zhou, Kaixiong Razzak, Imran Zhang, Yongfeng |
| contents | Text-Attributed Graphs (TAGs), where each node is associated with text descriptions, are ubiquitous in real-world scenarios. They typically exhibit distinctive structure and domain-specific knowledge, motivating the development of a Graph Foundation Model (GFM) that generalizes across diverse graphs and tasks. Despite large efforts to integrate Large Language Models (LLMs) and Graph Neural Networks (GNNs) for TAGs, existing approaches suffer from decoupled architectures with two-stage alignment, limiting their synergistic potential. Even worse, existing methods assign out-of-vocabulary (OOV) tokens to graph nodes, leading to graph-specific semantics, token explosion, and incompatibility with task-oriented prompt templates, which hinders cross-graph and cross-task transferability. To address these challenges, we propose PromptGFM, a versatile GFM for TAGs grounded in graph vocabulary learning. PromptGFM comprises two key components: (1) Graph Understanding Module, which explicitly prompts LLMs to replicate the finest GNN workflow within the text space, facilitating seamless GNN-LLM integration and elegant graph-text alignment; (2) Graph Inference Module, which establishes a language-based graph vocabulary ensuring expressiveness, transferability, and scalability, enabling readable instructions for LLM fine-tuning. Extensive experiments demonstrate our superiority and transferability across diverse graphs and tasks. The code is available at this: https://github.com/agiresearch/PromptGFM. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2503_03313 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | LLM as GNN: Graph Vocabulary Learning for Text-Attributed Graph Foundation Models Zhu, Xi Xue, Haochen Zhao, Ziwei Xu, Wujiang Huang, Jingyuan Guo, Minghao Wang, Qifan Zhou, Kaixiong Razzak, Imran Zhang, Yongfeng Machine Learning Computation and Language Text-Attributed Graphs (TAGs), where each node is associated with text descriptions, are ubiquitous in real-world scenarios. They typically exhibit distinctive structure and domain-specific knowledge, motivating the development of a Graph Foundation Model (GFM) that generalizes across diverse graphs and tasks. Despite large efforts to integrate Large Language Models (LLMs) and Graph Neural Networks (GNNs) for TAGs, existing approaches suffer from decoupled architectures with two-stage alignment, limiting their synergistic potential. Even worse, existing methods assign out-of-vocabulary (OOV) tokens to graph nodes, leading to graph-specific semantics, token explosion, and incompatibility with task-oriented prompt templates, which hinders cross-graph and cross-task transferability. To address these challenges, we propose PromptGFM, a versatile GFM for TAGs grounded in graph vocabulary learning. PromptGFM comprises two key components: (1) Graph Understanding Module, which explicitly prompts LLMs to replicate the finest GNN workflow within the text space, facilitating seamless GNN-LLM integration and elegant graph-text alignment; (2) Graph Inference Module, which establishes a language-based graph vocabulary ensuring expressiveness, transferability, and scalability, enabling readable instructions for LLM fine-tuning. Extensive experiments demonstrate our superiority and transferability across diverse graphs and tasks. The code is available at this: https://github.com/agiresearch/PromptGFM. |
| title | LLM as GNN: Graph Vocabulary Learning for Text-Attributed Graph Foundation Models |
| topic | Machine Learning Computation and Language |
| url | https://arxiv.org/abs/2503.03313 |