Large Language Models in Bioinformatics: A Survey

Fuente: arXiv
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Hauptverfasser: Wang, Zhenyu, Wang, Zikang, Jiang, Jiyue, Chen, Pengan, Shi, Xiangyu, Li, Yu
Format: Preprint
Veröffentlicht: 2025
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author Wang, Zhenyu
Wang, Zikang
Jiang, Jiyue
Chen, Pengan
Shi, Xiangyu
Li, Yu
author_facet Wang, Zhenyu
Wang, Zikang
Jiang, Jiyue
Chen, Pengan
Shi, Xiangyu
Li, Yu
contents Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. This survey provides a systematic review of recent advancements, focusing on genomic sequence modeling, RNA structure prediction, protein function inference, and single-cell transcriptomics. Meanwhile, we also discuss several key challenges, including data scarcity, computational complexity, and cross-omics integration, and explore future directions such as multimodal learning, hybrid AI models, and clinical applications. By offering a comprehensive perspective, this paper underscores the transformative potential of LLMs in driving innovations in bioinformatics and precision medicine.
format Preprint
id arxiv_https___arxiv_org_abs_2503_04490
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Large Language Models in Bioinformatics: A Survey
Wang, Zhenyu
Wang, Zikang
Jiang, Jiyue
Chen, Pengan
Shi, Xiangyu
Li, Yu
Computation and Language
Genomics
Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. This survey provides a systematic review of recent advancements, focusing on genomic sequence modeling, RNA structure prediction, protein function inference, and single-cell transcriptomics. Meanwhile, we also discuss several key challenges, including data scarcity, computational complexity, and cross-omics integration, and explore future directions such as multimodal learning, hybrid AI models, and clinical applications. By offering a comprehensive perspective, this paper underscores the transformative potential of LLMs in driving innovations in bioinformatics and precision medicine.
title Large Language Models in Bioinformatics: A Survey
topic Computation and Language
Genomics
url https://arxiv.org/abs/2503.04490