Towards Effective and Efficient Context-aware Nucleus Detection in Histopathology Whole Slide Images
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| Main Authors: | , , , , , , , , , |
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| Format: | Preprint |
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2025
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| _version_ | 1866917255732789248 |
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| author | Shui, Zhongyi Li, Honglin Zhang, Yunlong Sun, Yuxuan Ye, Yiwen Chen, Pingyi Guo, Ruizhe Cui, Lei Zhu, Chenglu Yang, Lin |
| author_facet | Shui, Zhongyi Li, Honglin Zhang, Yunlong Sun, Yuxuan Ye, Yiwen Chen, Pingyi Guo, Ruizhe Cui, Lei Zhu, Chenglu Yang, Lin |
| contents | Nucleus detection in histopathology whole slide images (WSIs) is crucial for a broad spectrum of clinical applications. The gigapixel size of WSIs necessitates the use of sliding window methodology for nucleus detection. However, mainstream methods process each sliding window independently, which overlooks broader contextual information and easily leads to inaccurate predictions. To address this limitation, recent studies additionally crop a large Filed-of-View (LFoV) patch centered on each sliding window to extract contextual features. However, such methods substantially increase whole-slide inference latency. In this work, we propose an effective and efficient context-aware nucleus detection approach. Specifically, instead of using LFoV patches, we aggregate contextual clues from off-the-shelf features of historically visited sliding windows, which greatly enhances the inference efficiency. Moreover, compared to LFoV patches used in previous works, the sliding window patches have higher magnification and provide finer-grained tissue details, thereby enhancing the classification accuracy. To develop the proposed context-aware model, we utilize annotated patches along with their surrounding unlabeled patches for training. Beyond exploiting high-level tissue context from these surrounding regions, we design a post-training strategy that leverages abundant unlabeled nucleus samples within them to enhance the model's context adaptability. Extensive experimental results on three challenging benchmarks demonstrate the superiority of our method. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2503_05678 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Towards Effective and Efficient Context-aware Nucleus Detection in Histopathology Whole Slide Images Shui, Zhongyi Li, Honglin Zhang, Yunlong Sun, Yuxuan Ye, Yiwen Chen, Pingyi Guo, Ruizhe Cui, Lei Zhu, Chenglu Yang, Lin Image and Video Processing Computer Vision and Pattern Recognition Nucleus detection in histopathology whole slide images (WSIs) is crucial for a broad spectrum of clinical applications. The gigapixel size of WSIs necessitates the use of sliding window methodology for nucleus detection. However, mainstream methods process each sliding window independently, which overlooks broader contextual information and easily leads to inaccurate predictions. To address this limitation, recent studies additionally crop a large Filed-of-View (LFoV) patch centered on each sliding window to extract contextual features. However, such methods substantially increase whole-slide inference latency. In this work, we propose an effective and efficient context-aware nucleus detection approach. Specifically, instead of using LFoV patches, we aggregate contextual clues from off-the-shelf features of historically visited sliding windows, which greatly enhances the inference efficiency. Moreover, compared to LFoV patches used in previous works, the sliding window patches have higher magnification and provide finer-grained tissue details, thereby enhancing the classification accuracy. To develop the proposed context-aware model, we utilize annotated patches along with their surrounding unlabeled patches for training. Beyond exploiting high-level tissue context from these surrounding regions, we design a post-training strategy that leverages abundant unlabeled nucleus samples within them to enhance the model's context adaptability. Extensive experimental results on three challenging benchmarks demonstrate the superiority of our method. |
| title | Towards Effective and Efficient Context-aware Nucleus Detection in Histopathology Whole Slide Images |
| topic | Image and Video Processing Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2503.05678 |