Cover Image

Reconstructing Noisy Gene Regulation Dynamics Using Extrinsic-Noise-Driven Neural Stochastic Differential Equations

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Zhang, Jiancheng, Li, Xiangting, Guo, Xiaolu, You, Zhaoyi, Böttcher, Lucas, Mogilner, Alex, Hoffman, Alexander, Chou, Tom, Xia, Mingtao
Format:	Preprint
Published:	2025
Subjects:	Quantitative Methods
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Overcompensation of transient and permanent death rate increases in age-structured models with cannibalistic interactions
by: Xia, Mingtao, et al.
Published: (2023)

Squared Wasserstein-2 Distance for Efficient Reconstruction of Stochastic Differential Equations
by: Xia, Mingtao, et al.
Published: (2024)

Kinetic theories of state- and generation-dependent cell populations
by: Xia, Mingtao, et al.
Published: (2024)

Reliable ligand discrimination in stochastic multistep kinetic proofreading: First passage time vs. product counting strategies
by: Li, Xiangting, et al.
Published: (2024)

Mathematical Characterization of Private and Public Immune Repertoire Sequences
by: Böttcher, Lucas, et al.
Published: (2022)

Aggregating multiple test results to improve medical decision-making
by: Böttcher, Lucas, et al.
Published: (2024)

Modeling and forecasting age-specific drug overdose mortality in the United States
by: Böttcher, Lucas, et al.
Published: (2023)

A Spectral Approach for Learning Spatiotemporal Neural Differential Equations
by: Xia, Mingtao, et al.
Published: (2023)

The role of APOBEC3-induced mutations in the differential evolution of monkeypox virus
by: Li, Xiangting, et al.
Published: (2023)

Spectrally Adapted Physics-Informed Neural Networks for Solving Unbounded Domain Problems
by: Xia, Mingtao, et al.
Published: (2022)

Controlling epidemics through optimal allocation of test kits and vaccine doses across networks
by: Xia, Mingtao, et al.
Published: (2021)

Adaptive Hyperbolic-cross-space Mapped Jacobi Method on Unbounded Domains with Applications to Solving Multidimensional Spatiotemporal Integrodifferential Equations
by: Deng, Yunhong, et al.
Published: (2024)

Quantifying Fish School Fragmentation under Predation Using Stochastic Differential Equations
by: Qi, Junyi, et al.
Published: (2025)

Reduced-Precision Stochastic Simulation for Mathematical Biology
by: Kimpson, Tom, et al.
Published: (2026)

A probabilistic model of relapse in drug addiction
by: Mao, Sayun, et al.
Published: (2024)

An efficient Wasserstein-distance approach for reconstructing jump-diffusion processes using parameterized neural networks
by: Xia, Mingtao, et al.
Published: (2024)

A kinetic theory for age-structured stochastic birth-death processes
by: Greenman, Chris D., et al.
Published: (2015)

Assessment of Uncertainty Quantification in Universal Differential Equations
by: Schmid, Nina, et al.
Published: (2024)

Learning dynamical systems with biochemically informed neural ordinary differential equations
by: Fonseca, Luis L., et al.
Published: (2026)

Assessing the Utility of Large Language Models for Phenotype-Driven Gene Prioritization in Rare Genetic Disorder Diagnosis
by: Kim, Junyoung, et al.
Published: (2024)

First Passage Problems in Biology
by: Chou, Tom, et al.
Published: (2014)

Frequency-dependent Chemolocation and Chemotactic Target Selection
by: Nowak, Sarah A., et al.
Published: (2008)

ICODEN: Ordinary Differential Equation Neural Networks for Interval-Censored Data
by: Wang, Haoling, et al.
Published: (2026)

CEI: A Clonal Expansion Identifier for T-cell receptor clones following SARS-CoV-2 vaccination
by: Pan, Yunbei, et al.
Published: (2026)

Stochastic nucleosome disassembly mediated by remodelers and histone fragmentation
by: Li, Xiangting, et al.
Published: (2023)

Stochastic dynamics and ribosome-RNAP interactions in Transcription-Translation Coupling
by: Li, Xiangting, et al.
Published: (2022)

Development of Hydrogen Bonding Magnetic Reaction-based Gene Regulation through Cyclic Electromagnetic DNA Simulation in Double-Stranded DNA
by: Kim, Yeon Sook, et al.
Published: (2012)

Bounding Transient Moments for a Class of Stochastic Reaction Networks Using Kolmogorov's Backward Equation
by: Iwasaki, Takeyuki, et al.
Published: (2026)

A Numerical Comparison of Petri Net and Ordinary Differential Equation SIR Component Models
by: Reckell, Trevor, et al.
Published: (2024)

Transcriptome and Redox Proteome Reveal Temporal Scales of Carbon Metabolism Regulation in Model Cyanobacteria Under Light Disturbance
by: Johnson, Connah G. M., et al.
Published: (2024)

PULSAR Effect: Revealing Potential Synergies in Combined Radiation Therapy and Immunotherapy via Differential Equations
by: Rouf, Samiha, et al.
Published: (2024)

Simulation-free Structure Learning for Stochastic Dynamics
by: Rimawi-Fine, Noah El, et al.
Published: (2025)

Stochastic thermodynamics for biological functions
by: Yuansheng Cao, et al.
Published: (2024)

Non-Negative Universal Differential Equations With Applications in Systems Biology
by: Philipps, Maren, et al.
Published: (2024)

An Open-Source, Open Data Approach to Activity Classification from Triaxial Accelerometry in an Ambulatory Setting
by: Nikookar, Sepideh, et al.
Published: (2026)

Role of Noise in the Fairen-Velarde model of bacterial respiration
by: Kundu, Soumyadeep, et al.
Published: (2024)

Integrative Adaptive Indexes from Noisy Routine Haematological Markers can Predict and Discriminate Health Status and Biological Age
by: Hernández-Orozco, Santiago, et al.
Published: (2023)

SOWAHA as a Cancer Suppressor Gene Influence Metabolic Reprogramming
by: Yi, Xiaohong, et al.
Published: (2024)

Spatially-extended Flow Phixer (SpeF-Phixer): A Spatially Extended $φ$-Mixing Framework for Gene Regulatory Causal Inference in Spatial Gene Field
by: Nagasaka, Toru, et al.
Published: (2025)

Surrogate Modeling and Control of Medical Digital Twins
by: Fonseca, Luis L., et al.
Published: (2024)