Integrating Dynamical Systems Modeling with Spatiotemporal scRNA-seq Data Analysis
Fuente:
arXiv
Saved in:
| Main Authors: | Zhang, Zhenyi, Sun, Yuhao, Peng, Qiangwei, Li, Tiejun, Zhou, Peijie |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Donor-Aware scRNA-seq Benchmarks for IBD Classification
by: Muhire, Jonathan
Published: (2026)
by: Muhire, Jonathan
Published: (2026)
Hypergraph Representations of scRNA-seq Data for Improved Clustering with Random Walks
by: He, Wan, et al.
Published: (2025)
by: He, Wan, et al.
Published: (2025)
Modeling Cell Dynamics and Interactions with Unbalanced Mean Field Schrödinger Bridge
by: Zhang, Zhenyi, et al.
Published: (2025)
by: Zhang, Zhenyi, et al.
Published: (2025)
Variational Regularized Unbalanced Optimal Transport: Single Network, Least Action
by: Sun, Yuhao, et al.
Published: (2025)
by: Sun, Yuhao, et al.
Published: (2025)
Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport
by: Zhang, Zhenyi, et al.
Published: (2024)
by: Zhang, Zhenyi, et al.
Published: (2024)
Random Matrix Theory-guided sparse PCA for single-cell RNA-seq data
by: Chardès, Victor
Published: (2025)
by: Chardès, Victor
Published: (2025)
Simultaneously Infer Cell Pseudotime,Velocity Field and Gene Interaction from Multi-Branch scRNA-seq Data with scPN
by: Zhou, Zhen, et al.
Published: (2024)
by: Zhou, Zhen, et al.
Published: (2024)
Learning collective multi-cellular dynamics from temporal scRNA-seq via a transformer-enhanced Neural SDE
by: Jiang, Qi, et al.
Published: (2025)
by: Jiang, Qi, et al.
Published: (2025)
Explainable Deep Learning Framework for SERS Bio-quantification
by: Zaki, Jihan K., et al.
Published: (2024)
by: Zaki, Jihan K., et al.
Published: (2024)
The Dissipation Theory of Aging: A Quantitative Analysis Using a Cellular Aging Map
by: Khodaee, Farhan, et al.
Published: (2025)
by: Khodaee, Farhan, et al.
Published: (2025)
adabmDCA 2.0 -- a flexible but easy-to-use package for Direct Coupling Analysis
by: Rosset, Lorenzo, et al.
Published: (2025)
by: Rosset, Lorenzo, et al.
Published: (2025)
Enhancing Swarms Durability to Threats via Graph Signal Processing and GNN-based Generative Modeling
by: Karin, Jonathan, et al.
Published: (2025)
by: Karin, Jonathan, et al.
Published: (2025)
scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data
by: Ovcharenko, Olga, et al.
Published: (2025)
by: Ovcharenko, Olga, et al.
Published: (2025)
Inferring stochastic dynamics with growth from cross-sectional data
by: Zhang, Stephen, et al.
Published: (2025)
by: Zhang, Stephen, et al.
Published: (2025)
scPPDM: A Diffusion Model for Single-Cell Drug-Response Prediction
by: Liang, Zhaokang, et al.
Published: (2025)
by: Liang, Zhaokang, et al.
Published: (2025)
scMRDR: A scalable and flexible framework for unpaired single-cell multi-omics data integration
by: Sun, Jianle, et al.
Published: (2025)
by: Sun, Jianle, et al.
Published: (2025)
Protein generation with embedding learning for motif diversification
by: Michalewicz, Kevin, et al.
Published: (2025)
by: Michalewicz, Kevin, et al.
Published: (2025)
Inferring biological processes with intrinsic noise from cross-sectional data
by: Maddu, Suryanarayana, et al.
Published: (2024)
by: Maddu, Suryanarayana, et al.
Published: (2024)
Loop-Diffusion: an equivariant diffusion model for designing and scoring protein loops
by: Borisiak, Kevin, et al.
Published: (2024)
by: Borisiak, Kevin, et al.
Published: (2024)
Mass Balance Approximation of Unfolding Improves Potential-Like Methods for Protein Stability Predictions
by: Rossi, Ivan, et al.
Published: (2025)
by: Rossi, Ivan, et al.
Published: (2025)
scBIT: Integrating Single-cell Transcriptomic Data into fMRI-based Prediction for Alzheimer's Disease Diagnosis
by: Huang, Yu-An, et al.
Published: (2025)
by: Huang, Yu-An, et al.
Published: (2025)
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
by: Ren, Yuchen, et al.
Published: (2024)
by: Ren, Yuchen, et al.
Published: (2024)
ConfRover: Simultaneous Modeling of Protein Conformation and Dynamics via Autoregression
by: Shen, Yuning, et al.
Published: (2025)
by: Shen, Yuning, et al.
Published: (2025)
scDrugMap: Benchmarking Large Foundation Models for Drug Response Prediction
by: Wang, Qing, et al.
Published: (2025)
by: Wang, Qing, et al.
Published: (2025)
Machine learning approaches for interpretable antibody property prediction using structural data
by: Michalewicz, Kevin, et al.
Published: (2025)
by: Michalewicz, Kevin, et al.
Published: (2025)
Integrating Dynamical Systems Learning with Foundational Models: A Meta-Evolutionary AI Framework for Clinical Trials
by: Geraci, Joseph, et al.
Published: (2025)
by: Geraci, Joseph, et al.
Published: (2025)
scDiffusion: conditional generation of high-quality single-cell data using diffusion model
by: Luo, Erpai, et al.
Published: (2024)
by: Luo, Erpai, et al.
Published: (2024)
Predicting Soil Macronutrient Levels: A Machine Learning Approach Models Trained on pH, Conductivity, and Average Power of Acid-Base Solutions
by: Kumar, Mridul, et al.
Published: (2025)
by: Kumar, Mridul, et al.
Published: (2025)
Scalable Spatio-Temporal SE(3) Diffusion for Long-Horizon Protein Dynamics
by: Shoghi, Nima, et al.
Published: (2026)
by: Shoghi, Nima, et al.
Published: (2026)
Integrating Biological-Informed Recurrent Neural Networks for Glucose-Insulin Dynamics Modeling
by: De Carli, Stefano, et al.
Published: (2025)
by: De Carli, Stefano, et al.
Published: (2025)
Knowledge from Large-Scale Protein Contact Prediction Models Can Be Transferred to the Data-Scarce RNA Contact Prediction Task
by: Jian, Yiren, et al.
Published: (2023)
by: Jian, Yiren, et al.
Published: (2023)
LLM$^3$-DTI: A Large Language Model and Multi-modal data co-powered framework for Drug-Target Interaction prediction
by: Zhang, Yuhao, et al.
Published: (2025)
by: Zhang, Yuhao, et al.
Published: (2025)
Deep Generative Modeling for Identification of Noisy, Non-Stationary Dynamical Systems
by: Voina, Doris, et al.
Published: (2024)
by: Voina, Doris, et al.
Published: (2024)
Toward more accurate and generalizable brain deformation estimators for traumatic brain injury detection with unsupervised domain adaptation
by: Zhan, Xianghao, et al.
Published: (2023)
by: Zhan, Xianghao, et al.
Published: (2023)
mRNA2vec: mRNA Embedding with Language Model in the 5'UTR-CDS for mRNA Design
by: Zhang, Honggen, et al.
Published: (2024)
by: Zhang, Honggen, et al.
Published: (2024)
RNAGenScape: Property-Guided, Optimized Generation of mRNA Sequences with Manifold Langevin Dynamics
by: Liao, Danqi, et al.
Published: (2025)
by: Liao, Danqi, et al.
Published: (2025)
Integrating Probabilistic Trees and Causal Networks for Clinical and Epidemiological Data
by: Zahoor, Sheresh, et al.
Published: (2025)
by: Zahoor, Sheresh, et al.
Published: (2025)
Conformal Prediction in Dynamic Biological Systems
by: Portela, Alberto, et al.
Published: (2024)
by: Portela, Alberto, et al.
Published: (2024)
pAE: An Efficient Autoencoder Architecture for Modeling the Lateral Geniculate Nucleus by Integrating Feedforward and Feedback Streams in Human Visual System
by: Gorji, Moslem, et al.
Published: (2024)
by: Gorji, Moslem, et al.
Published: (2024)
Comparative Analysis of Data Preprocessing Methods, Feature Selection Techniques and Machine Learning Models for Improved Classification and Regression Performance on Imbalanced Genetic Data
by: Kaur, Arshmeet, et al.
Published: (2024)
by: Kaur, Arshmeet, et al.
Published: (2024)
Similar Items
-
Donor-Aware scRNA-seq Benchmarks for IBD Classification
by: Muhire, Jonathan
Published: (2026) -
Hypergraph Representations of scRNA-seq Data for Improved Clustering with Random Walks
by: He, Wan, et al.
Published: (2025) -
Modeling Cell Dynamics and Interactions with Unbalanced Mean Field Schrödinger Bridge
by: Zhang, Zhenyi, et al.
Published: (2025) -
Variational Regularized Unbalanced Optimal Transport: Single Network, Least Action
by: Sun, Yuhao, et al.
Published: (2025) -
Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport
by: Zhang, Zhenyi, et al.
Published: (2024)