Image de couverture de livre

From de Bruijn graphs to variation graphs-relationships between pangenome models

Fuente: arXiv

Enregistré dans:

Détails bibliographiques
Auteurs principaux:	Cicherski, Adam, Dojer, Norbert
Format:	Preprint
Publié:	2025
Sujets:	Genomics Combinatorics
Accès en ligne:	Acceder al recurso
Tags:	Ajouter un tag Pas de tags, Soyez le premier à ajouter un tag!

Documents similaires

Approaches to studying virus pangenome variation graphs
par: Downing, Tim
Publié: (2024)

An algorithm to align a chain of sequences to paths in a pangenome graph
par: Solun, Gorkem Kadir, et autres
Publié: (2025)

Brassica Panache: A multi‐species graph pangenome representing presence absence variation across forty‐one Brassica genomes
par: Tessa R. MacNish, et autres
Publié: (2024)

Lock-free de Bruijn graph
par: Górniak, Daniel, et autres
Publié: (2024)

Expected Density of Random Minimizers
par: Golan, Shay, et autres
Publié: (2024)

Finding easy regions for short-read variant calling from pangenome data
par: Li, Heng
Publié: (2025)

LCPan: efficient variation graph construction using Locally Consistent Parsing
par: Ashyralyyev, Akmuhammet, et autres
Publié: (2025)

k-mer-based approaches to bridging pangenomics and population genetics
par: Roberts, Miles D., et autres
Publié: (2024)

A pangenome reveals LTR repeat dynamics as a major driver of genome evolution in Chenopodium
par: Kate E. Jaggi, et autres
Publié: (2025)

Constructing Semi-Directed Level-1 Phylogenetic Networks from Quarnets
par: Huebler, Sophia, et autres
Publié: (2019)

Exploring gene content with pangene graphs
par: Li, Heng, et autres
Publié: (2024)

Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference
par: Fournier, Patrick, et autres
Publié: (2025)

On the independence number of de Bruijn graphs
par: Majer, Pietro, et autres
Publié: (2026)

Single-cell 3D genome reconstruction in the haploid setting using rigidity theory
par: Dewar, Sean, et autres
Publié: (2024)

PanDelos-plus: A parallel algorithm for computing sequence homology in pangenomic analysis
par: Colli, Simone, et autres
Publié: (2025)

Interpretable graph-based models on multimodal biomedical data integration: A technical review and benchmarking
par: Sadeghi, Alireza, et autres
Publié: (2025)

A sorghum pangenome reference improves global crop trait discovery.
par: Morris, Geoffrey P, et autres
Publié: (2026)

Bayesian Cox model with graph-structured variable selection priors for multi-omics biomarker identification
par: Hermansen, Tobias Østmo, et autres
Publié: (2025)

Data release for graphREML
par: Li, Hui, et autres
Publié: (2025)

Splitting vertices of bipartite graphs preserves de Bruijn-Erdős property
par: Beaudou, Laurent, et autres
Publié: (2025)

On extremal factors of de Bruijn-like graphs
par: Álvarez, Nicolás, et autres
Publié: (2023)

Local haplotyping reveals insights into the genetic control of flowering time variation in wild and domesticated soybean
par: Shameela Mohamedikbal, et autres
Publié: (2024)

A review on the applications of graph neural networks in materials science at the atomic scale
par: Xingyue Shi, et autres
Publié: (2024)

A machine learning‐based crystal graph network and its application in development of functional materials
par: Gang Xu, et autres
Publié: (2024)

A knowledge graph attention network for the cold‐start problem in intelligent manufacturing: Interpretability and accuracy improvement
par: Ziye Zhou, et autres
Publié: (2025)

A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
par: Davies, Billie E, et autres
Publié: (2026)

Pangenome insights into structural variation and functional diversification of barley CCT motif genes
par: Zihao Zhu, et autres
Publié: (2025)

Molecular polymorphisms that underlie trait variation in crops: Lessons learned from soybean
par: Mary Jane C. Espina, et autres
Publié: (2025)

Heterogeneous graph attention network improves cancer multiomics integration
par: Tabakhi, Sina, et autres
Publié: (2024)

Defining the relationship between cathepsin B and esophageal adenocarcinoma: conjoint analysis of Mendelian randomization, transcriptome-wide association studies, and single-cell RNA sequencing data
par: Li, Jialin, et autres
Publié: (2025)

Thermodynamic variational principle, its connections to the phenomenological laws and its applications to the derivation of microstructural models
par: Qiang Du
Publié: (2024)

Genetic dissection of the root system architecture QTLome and its relationship with early shoot development, breeding and adaptation in durum wheat
par: Giuseppe Sciara, et autres
Publié: (2025)

Addressing missing context in regulatory variation across primate evolution
par: Housman, Genevieve, et autres
Publié: (2025)

Exploring chromosomal variations in garden roses: Insights from high‐density SNP array data and a new tool, Qploidy
par: Cristiane H. Taniguti, et autres
Publié: (2025)

Partial domain adaptation enables cross domain cell type annotation between scRNA-seq and snRNA-seq
par: Chen, Xiran, et autres
Publié: (2025)

Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
par: Louvel, Guillaume, et autres
Publié: (2024)

Improving spliced alignment by modeling splice sites with deep learning
par: Yang, Siying, et autres
Publié: (2025)

Length distribution of sequencing by synthesis: fixed flow cycle model
par: Kong, Yong
Publié: (2014)

Understanding the genetic basis of variation in meiotic recombination: past, present, and future
par: Johnston, Susan E.
Publié: (2024)

FlexLMM: a Nextflow linear mixed model framework for GWAS
par: Pierotti, Saul, et autres
Publié: (2024)