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Bibliographic Details
Main Authors: Zdyb, Frans, Alonso, Albert, Kirkegaard, Julius B.
Format: Preprint
Published: 2025
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Online Access:https://arxiv.org/abs/2503.14525
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author Zdyb, Frans
Alonso, Albert
Kirkegaard, Julius B.
author_facet Zdyb, Frans
Alonso, Albert
Kirkegaard, Julius B.
contents Detecting slender, overlapping structures remains a challenge in computational microscopy. While recent coordinate-based approaches improve detection, they often produce less accurate splines than pixel-based methods. We introduce a training-free differentiable rendering approach to spline refinement, achieving both high reliability and sub-pixel accuracy. Our method improves spline quality, enhances robustness to distribution shifts, and shrinks the gap between synthetic and real-world data. Being fully unsupervised, the method is a drop-in replacement for the popular active contour model for spline refinement. Evaluated on C. elegans nematodes, a popular model organism for drug discovery and biomedical research, we demonstrate that our approach combines the strengths of both coordinate- and pixel-based methods.
format Preprint
id arxiv_https___arxiv_org_abs_2503_14525
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Spline refinement with differentiable rendering
Zdyb, Frans
Alonso, Albert
Kirkegaard, Julius B.
Image and Video Processing
Computer Vision and Pattern Recognition
Machine Learning
Applications
Detecting slender, overlapping structures remains a challenge in computational microscopy. While recent coordinate-based approaches improve detection, they often produce less accurate splines than pixel-based methods. We introduce a training-free differentiable rendering approach to spline refinement, achieving both high reliability and sub-pixel accuracy. Our method improves spline quality, enhances robustness to distribution shifts, and shrinks the gap between synthetic and real-world data. Being fully unsupervised, the method is a drop-in replacement for the popular active contour model for spline refinement. Evaluated on C. elegans nematodes, a popular model organism for drug discovery and biomedical research, we demonstrate that our approach combines the strengths of both coordinate- and pixel-based methods.
title Spline refinement with differentiable rendering
topic Image and Video Processing
Computer Vision and Pattern Recognition
Machine Learning
Applications
url https://arxiv.org/abs/2503.14525