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Bibliographic Details
Main Authors:	Descamps, Axel, Forget, Sélène, Lahlou, Aliénor, Lavergne, Claire, Berthelot, Camille, Stirnemann, Guillaume, Vuilleumier, Rodolphe, Chéron, Nicolas
Format:	Preprint
Published:	2025
Subjects:	Computer Vision and Pattern Recognition Biomolecules
Online Access:	https://arxiv.org/abs/2503.19067
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CryoMAE: Few-Shot Cryo-EM Particle Picking with Masked Autoencoders
by: Xu, Chentianye, et al.
Published: (2024)

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search
by: Liu, Mengdi, et al.
Published: (2025)

Smartphone-integrated RPA-CRISPR-Cas12a Detection System with Microneedle Sampling for Point-of-Care Diagnosis of Potato Late Blight in Early Stage
by: Zhao, Jiangnan, et al.
Published: (2025)

Fine-tuning DeepSeek-OCR-2 for Molecular Structure Recognition
by: Tang, Haocheng, et al.
Published: (2026)

CFP-Gen: Combinatorial Functional Protein Generation via Diffusion Language Models
by: Yin, Junbo, et al.
Published: (2025)

Rapid hyperspectral photothermal mid-infrared spectroscopic imaging from sparse data for gynecologic cancer tissue subtyping
by: Reihanisaransari, Reza, et al.
Published: (2024)

SMiCRM: A Benchmark Dataset of Mechanistic Molecular Images
by: Leung, Ching Ting, et al.
Published: (2024)

LG-NuSegHop: A Local-to-Global Self-Supervised Pipeline For Nuclei Instance Segmentation
by: Magoulianitis, Vasileios, et al.
Published: (2025)

Predicting Distance matrix with large language models
by: Yang, Jiaxing
Published: (2024)

CryoSAMU: Enhancing 3D Cryo-EM Density Maps of Protein Structures at Intermediate Resolution with Structure-Aware Multimodal U-Nets
by: Zhang, Chenwei, et al.
Published: (2025)

Cryo-em images are intrinsically low dimensional
by: Evans, Luke, et al.
Published: (2025)

Deep Learning model predicts the c-Kit-11 mutational status of canine cutaneous mast cell tumors by HE stained histological slides
by: Puget, Chloé, et al.
Published: (2024)

CellFlux: Simulating Cellular Morphology Changes via Flow Matching
by: Zhang, Yuhui, et al.
Published: (2025)

Applications of deep generative models to DNA reaction kinetics and to cryogenic electron microscopy
by: Zhang, Chenwei
Published: (2026)

SHREC 2025: Protein surface shape retrieval including electrostatic potential
by: Yacoub, Taher, et al.
Published: (2025)

Aligning Proteins and Language: A Foundation Model for Protein Retrieval
by: Wu, Qifeng, et al.
Published: (2025)

CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM
by: Jeon, Minkyu, et al.
Published: (2024)

Improved Cryo-EM Pose Estimation and 3D Classification through Latent-Space Disentanglement
by: Chen, Weijie, et al.
Published: (2023)

One pocket to activate them all: Efforts on understanding the modulator pocket in K2P channels
by: Mendez-Otalvaro, Edward, et al.
Published: (2025)

Toulouse Hyperspectral Data Set: a benchmark data set to assess semi-supervised spectral representation learning and pixel-wise classification techniques
by: Thoreau, Romain, et al.
Published: (2023)

Multiscale guidance of protein structure prediction with heterogeneous cryo-EM data
by: Raghu, Rishwanth, et al.
Published: (2025)

Representation choice shapes the interpretation of protein conformational dynamics
by: Giottonini, Axel, et al.
Published: (2026)

OpenMS WebApps: Building User-Friendly Solutions for MS Analysis
by: Müller, Tom David, et al.
Published: (2024)

Automated Neuron Labelling Enables Generative Steering and Interpretability in Protein Language Models
by: Banerjee, Arjun, et al.
Published: (2025)

How Large is the Universe of RNA-Like Motifs? A Clustering Analysis of RNA Graph Motifs Using Topological Descriptors
by: Wang, Rui, et al.
Published: (2025)

Flexibility-Conditioned Protein Structure Design with Flow Matching
by: Viliuga, Vsevolod, et al.
Published: (2025)

How good are deep learning methods for automated road safety analysis using video data? An experimental study
by: Liu, Qingwu, et al.
Published: (2025)

MoleculeQA: A Dataset to Evaluate Factual Accuracy in Molecular Comprehension
by: Lu, Xingyu, et al.
Published: (2024)

Structure-Enhanced Protein Instruction Tuning: Towards General-Purpose Protein Understanding with LLMs
by: Wu, Wei, et al.
Published: (2024)

SGNet: Folding Symmetrical Protein Complex with Deep Learning
by: Li, Zhaoqun, et al.
Published: (2024)

MDIntrinsicDimension: Dimensionality-Based Analysis of Collective Motions in Macromolecules from Molecular Dynamics Trajectories
by: Cazzaniga, Irene, et al.
Published: (2025)

Advancing biomolecular understanding and design following human instructions
by: Zhuang, Xiang, et al.
Published: (2024)

Self-Organizing Maps of Unbiased Ligand-Target Binding Pathways and Kinetics
by: Callea, Lara, et al.
Published: (2024)

Entropy Transfer Throughout the Structure of PDZ-2 and TIM-Barrel Proteins. A Dynamic Gaussian Network Model Study
by: Galaz, German Mino, et al.
Published: (2025)

Entropy and Information is Transferred from Peripherical Sites to the Catalytic Sites of Enzymes
by: Galaz, German Mino, et al.
Published: (2026)

Normalizing Flows with Iterative Denoising
by: Chen, Tianrong, et al.
Published: (2026)

VTX: Real-time high-performance molecular structure and dynamics visualization software
by: Maria, Maxime, et al.
Published: (2025)

Community recommendations on cryoEM data archiving and validation
by: Kleywegt, Gerard J., et al.
Published: (2023)

Clustering for Protein Representation Learning
by: Quan, Ruijie, et al.
Published: (2024)

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