Agptools: a utility suite for editing genome assemblies
Fuente:
arXiv
Saved in:
| Main Authors: | Ricemeyer, Edward S., Carroll, Rachel A., Warren, Wesley C. |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
PASS: De novo assembler for short peptide sequences
by: Warren, René L.
Published: (2022)
by: Warren, René L.
Published: (2022)
Exploring the role of FAT genes in Solanaceae species through genome‐wide analysis and genome editing
by: Sibel Bahadır, et al.
Published: (2024)
by: Sibel Bahadır, et al.
Published: (2024)
The nuclear and mitochondrial genomes of amoebophrya sp. ex Karlodinium veneficum.
by: DeMontigny, Wesley, et al.
Published: (2025)
by: DeMontigny, Wesley, et al.
Published: (2025)
Chromosome-level genome assembly and annotation of the sharpsnout seabream (Diplodus puntazzo).
by: Pegueroles, Cinta, et al.
Published: (2025)
by: Pegueroles, Cinta, et al.
Published: (2025)
A high-quality Oxford Nanopore assembly of the hourglass dolphin (Lagenorhynchus cruciger) genome.
by: McGrath, Nick, et al.
Published: (2025)
by: McGrath, Nick, et al.
Published: (2025)
Plant genome assembly and annotation.
by: Michael, Todd P
Published: (2026)
by: Michael, Todd P
Published: (2026)
A chromosome-level genome assembly of the East Asian fourfinger threadfin, Eleutheronema rhadinum (Jordan & Evermann, 1902).
by: Lu, Jingheng, et al.
Published: (2025)
by: Lu, Jingheng, et al.
Published: (2025)
Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral.
by: Li, Kefan, et al.
Published: (2025)
by: Li, Kefan, et al.
Published: (2025)
Reference genome for the benthic marine diatom Psammoneis japonica: Bacterial associations and repeat-driven genome size evolution in diatoms.
by: Roberts, Wade R, et al.
Published: (2025)
by: Roberts, Wade R, et al.
Published: (2025)
Chromosome‐level genome assembly and annotation of Ulmus minor reveal dynamic intrageneric clusters of resistance genes
by: Jorge Pallares‐Zazo, et al.
Published: (2025)
by: Jorge Pallares‐Zazo, et al.
Published: (2025)
Chromosome-level genome assembly of the Leopard Wrasse Macropharyngodon Meleagris.
by: Yu, Haiyan, et al.
Published: (2026)
by: Yu, Haiyan, et al.
Published: (2026)
Chromosome-level genome assembly of the ivory shell Babylonia areolata.
by: Zou, Yu, et al.
Published: (2024)
by: Zou, Yu, et al.
Published: (2024)
Chromosome-level genome assembly for the ecologically and economically important alga Saccharina japonica.
by: Li, Xiaodong, et al.
Published: (2025)
by: Li, Xiaodong, et al.
Published: (2025)
Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora.
by: Locatelli, Nicolas S, et al.
Published: (2024)
by: Locatelli, Nicolas S, et al.
Published: (2024)
Population and herbarium genomics provide a comprehensive framework for a revision of Microcoleus (Cyanobacteria).
by: Skoupý, Svatopluk, et al.
Published: (2026)
by: Skoupý, Svatopluk, et al.
Published: (2026)
Chromosome-level genome assembly of Chirolophis japonicus Herzenstein, 1890 (Stichaeidae, Perciformes).
by: Liu, Kaiqiang, et al.
Published: (2026)
by: Liu, Kaiqiang, et al.
Published: (2026)
Highly contiguous chromosome-level assembly of the rock goby (Gobius paganellus) genome.
by: Franchini, Paolo, et al.
Published: (2026)
by: Franchini, Paolo, et al.
Published: (2026)
A step toward a reinforcement learning de novo genome assembler
by: Padovani, Kleber, et al.
Published: (2021)
by: Padovani, Kleber, et al.
Published: (2021)
A chromosome-level genome assembly of Coryphaenoides armatus.
by: Wu, Boqiong, et al.
Published: (2026)
by: Wu, Boqiong, et al.
Published: (2026)
Telomere-to-telomere gapless genome assembly of the giant grouper (Epinephelus lanceolatus).
by: Zhou, Qian, et al.
Published: (2024)
by: Zhou, Qian, et al.
Published: (2024)
Annotated genome of the Atlantic dog whelk, Nucella lapillus.
by: Ford, Meghan R, et al.
Published: (2025)
by: Ford, Meghan R, et al.
Published: (2025)
Zimin patterns in genomes
by: Chantzi, Nikol, et al.
Published: (2024)
by: Chantzi, Nikol, et al.
Published: (2024)
High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829).
by: Chen, Xiaomei, et al.
Published: (2025)
by: Chen, Xiaomei, et al.
Published: (2025)
Identification and characterization of unique to human regulatory sequences in embryonic stem cells reveal associations with transposable elements, distal enhancers, non-coding RNA, and DNA methylation-driven mechanisms of genome editing
by: Glinsky, Gennadi
Published: (2014)
by: Glinsky, Gennadi
Published: (2014)
Two genomes of the white perch (Morone americana), an ecologically important teleost.
by: Paris, Josephine R, et al.
Published: (2025)
by: Paris, Josephine R, et al.
Published: (2025)
A high-quality chromosome-level genome assembly of a feather star Glyptometra sp. from a deep seamount.
by: Wang, Jing, et al.
Published: (2026)
by: Wang, Jing, et al.
Published: (2026)
Phase transition in the computational complexity of the shortest common superstring and genome assembly
by: Fernandez, L. A., et al.
Published: (2022)
by: Fernandez, L. A., et al.
Published: (2022)
The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation.
by: Kosch, Tiffany A, et al.
Published: (2024)
by: Kosch, Tiffany A, et al.
Published: (2024)
Guide to k-mer approaches for genomics across the tree of life
by: Jenike, Katharine M., et al.
Published: (2024)
by: Jenike, Katharine M., et al.
Published: (2024)
Hybrid kernels integrating genomic and multispectral data improve wheat genomic prediction accuracy
by: Osval A. Montesinos‐López, et al.
Published: (2025)
by: Osval A. Montesinos‐López, et al.
Published: (2025)
Complete genome sequence of Lysinibacillus sp. WB86, a potential antimicrobial lanthipeptides producer.
by: Sun, Huai-Ying, et al.
Published: (2025)
by: Sun, Huai-Ying, et al.
Published: (2025)
Chromosome-level genome assembly of the freshwater bivalve Anodonta woodiana.
by: Chen, Xiubao, et al.
Published: (2025)
by: Chen, Xiubao, et al.
Published: (2025)
High-quality Chromosome-level genome assembly of male and female greater amberjack (Seriola dumerili).
by: Chen, Lei, et al.
Published: (2025)
by: Chen, Lei, et al.
Published: (2025)
gggenomes: effective and versatile visualizations for comparative genomics
by: Hackl, Thomas, et al.
Published: (2024)
by: Hackl, Thomas, et al.
Published: (2024)
The genome assembly of the westslope cutthroat trout, Oncorhynchus lewisi, reveals interspecific chromosomal rearrangements with the rainbow trout, Oncorhynchus mykiss.
by: Flores, Anne-Marie, et al.
Published: (2025)
by: Flores, Anne-Marie, et al.
Published: (2025)
MedakaBase as a unified genomic resource platform for medaka fish biology.
by: Morikami, Kenji, et al.
Published: (2025)
by: Morikami, Kenji, et al.
Published: (2025)
Identification of a deep-branching lineage of algae using environmental plastid genomes.
by: Jamy, Mahwash, et al.
Published: (2025)
by: Jamy, Mahwash, et al.
Published: (2025)
Integrative chromosome‐scale genome analysis of cupuassu provides insights into witches' broom disease resistance and expands genomic resources for Theobroma
by: Vinicius A. C. de Abreu, et al.
Published: (2026)
by: Vinicius A. C. de Abreu, et al.
Published: (2026)
Chromosome-level genome assembly and annotation of a sea toad (Chaunax sp.).
by: Zhan, Zifeng, et al.
Published: (2024)
by: Zhan, Zifeng, et al.
Published: (2024)
wgatools: an ultrafast toolkit for manipulating whole genome alignments
by: Wei, Wenjie, et al.
Published: (2024)
by: Wei, Wenjie, et al.
Published: (2024)
Similar Items
-
PASS: De novo assembler for short peptide sequences
by: Warren, René L.
Published: (2022) -
Exploring the role of FAT genes in Solanaceae species through genome‐wide analysis and genome editing
by: Sibel Bahadır, et al.
Published: (2024) -
The nuclear and mitochondrial genomes of amoebophrya sp. ex Karlodinium veneficum.
by: DeMontigny, Wesley, et al.
Published: (2025) -
Chromosome-level genome assembly and annotation of the sharpsnout seabream (Diplodus puntazzo).
by: Pegueroles, Cinta, et al.
Published: (2025) -
A high-quality Oxford Nanopore assembly of the hourglass dolphin (Lagenorhynchus cruciger) genome.
by: McGrath, Nick, et al.
Published: (2025)