Can geometric combinatorics improve RNA branching predictions?
Fuente:
arXiv
Saved in:
| Main Authors: | Poznanović, Svetlana, Cardwell, Owen, Heitsch, Christine |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
An Efficient Algorithm for Exploring RNA Branching Conformations under the Nearest-Neighbor Thermodynamic Model
by: Poznanović, Svetlana, et al.
Published: (2025)
by: Poznanović, Svetlana, et al.
Published: (2025)
Improving RNA secondary structure prediction via state inference with deep recurrent neural networks
by: Willmott, Devin, et al.
Published: (2019)
by: Willmott, Devin, et al.
Published: (2019)
Computation of Minimum Numbers of Tile and Bond-Edge Types for DNA Self-Assembly of Select Archimedean Graphs
by: Merrithew, Tabitha, et al.
Published: (2025)
by: Merrithew, Tabitha, et al.
Published: (2025)
Counterions in RNA structure: Structural bioinformatics analysis to identify the role of Mg2+ ions in base pair formation
by: Adhikari, Swati, et al.
Published: (2024)
by: Adhikari, Swati, et al.
Published: (2024)
A Standardized Benchmark for Machine-Learned Molecular Dynamics using Weighted Ensemble Sampling
by: Aghili, Alexander, et al.
Published: (2025)
by: Aghili, Alexander, et al.
Published: (2025)
Biological Modelling with Nonlocal Advection Diffusion Equations
by: Painter, Kevin J, et al.
Published: (2023)
by: Painter, Kevin J, et al.
Published: (2023)
Tikhonov-Fenichel Reductions and their Application to a Novel Modelling Approach for Mutualism
by: Apelt, Johannes, et al.
Published: (2025)
by: Apelt, Johannes, et al.
Published: (2025)
Compound Mutations in the Abl1 Kinase Cause Inhibitor Resistance by Shifting DFG Flip Mechanisms and Relative State Populations
by: da Silva, Gabriel Monteiro, et al.
Published: (2024)
by: da Silva, Gabriel Monteiro, et al.
Published: (2024)
Prediction of Binding Affinity for ErbB Inhibitors Using Deep Neural Network Model with Morgan Fingerprints as Features
by: Aman, La Ode
Published: (2025)
by: Aman, La Ode
Published: (2025)
Stochastic Optimal Control of an Epidemic Under Partial Information
by: Njiasse, Ibrahim Mbouandi, et al.
Published: (2025)
by: Njiasse, Ibrahim Mbouandi, et al.
Published: (2025)
A mathematical framework of consumer-resource dynamics: How to incorporate interactions between interactions in evolutionary process
by: Bratus, Alexander S., et al.
Published: (2025)
by: Bratus, Alexander S., et al.
Published: (2025)
Predicting the stability of profiling signals of small RNAs
by: Li, Qiuyun, et al.
Published: (2024)
by: Li, Qiuyun, et al.
Published: (2024)
On the Stability of Discrete Reaction-Diffusion System of Networked Dynamical Systems
by: Kumar, Dinesh
Published: (2025)
by: Kumar, Dinesh
Published: (2025)
Abiogenesis on Different Star Types; a Dissipative Photochemical Perspective
by: Ledesma, Andrés, et al.
Published: (2025)
by: Ledesma, Andrés, et al.
Published: (2025)
Methods for Analyzing RNA Pseudoknots via Chord Diagrams and Intersection Graphs
by: Ibrahim, Rayan, et al.
Published: (2025)
by: Ibrahim, Rayan, et al.
Published: (2025)
Dynamics of Reaction-Diffusion-Advection System and its Impact on River Ecology in the Presence of Spatial Heterogeneity I
by: Kamrujjaman, Md., et al.
Published: (2024)
by: Kamrujjaman, Md., et al.
Published: (2024)
Structured Model Conserving Biomass for the Size-spectrum Evolution in Aquatic Ecosystems
by: Kanzler, Laura, et al.
Published: (2022)
by: Kanzler, Laura, et al.
Published: (2022)
Stochastic Gene Expression Model of Nuclear-to-Cell Ratio Homeostasis
by: Bai, Xuesong, et al.
Published: (2024)
by: Bai, Xuesong, et al.
Published: (2024)
Dynamical behavior of Predator-Prey with Allee Effect on Both Populations and Disease in Predator
by: Singh, Khushbu, et al.
Published: (2024)
by: Singh, Khushbu, et al.
Published: (2024)
CavDetect: A DBSCAN Algorithm based Novel Cavity Detection Model on Protein Structure
by: Adhikari, Swati, et al.
Published: (2024)
by: Adhikari, Swati, et al.
Published: (2024)
A Mathematical Primer on Water Ice
by: Scott, L. Ridgway
Published: (2025)
by: Scott, L. Ridgway
Published: (2025)
Stability, bifurcation and spikes of stationary solutions in a chemotaxis system with singular sensitivity and logistic source
by: Kurt, Halil Ibrahim, et al.
Published: (2024)
by: Kurt, Halil Ibrahim, et al.
Published: (2024)
Unveiling Biological Models Through Turing Patterns
by: Li, Yuhan, et al.
Published: (2025)
by: Li, Yuhan, et al.
Published: (2025)
Global dynamics in a reaction-diffusion competition model with edge behavior
by: Liu, Kuiyue, et al.
Published: (2025)
by: Liu, Kuiyue, et al.
Published: (2025)
Autocatalytic cores in the diluted regime:classification and properties
by: Nandan, Praneet, et al.
Published: (2025)
by: Nandan, Praneet, et al.
Published: (2025)
Global dynamics of a two-species competition patch model in a Y-shaped river network
by: Yan, Weifang, et al.
Published: (2025)
by: Yan, Weifang, et al.
Published: (2025)
Multiscale Jones Polynomial and Persistent Jones Polynomial for Knot Data Analysis
by: Song, Ruzhi, et al.
Published: (2024)
by: Song, Ruzhi, et al.
Published: (2024)
Aggregation-diffusion in heterogeneous environments
by: Potts, Jonathan R.
Published: (2024)
by: Potts, Jonathan R.
Published: (2024)
Algorithmic Pot Generation: Algorithms for the Flexible-Tile Model of DNA Self-Assembly
by: Ashworth, Jacob, et al.
Published: (2024)
by: Ashworth, Jacob, et al.
Published: (2024)
Stability of a Delayed Predator-Prey Model for Puma Concolor
by: Mejías, Wilson, et al.
Published: (2024)
by: Mejías, Wilson, et al.
Published: (2024)
The information gain limit of molecular computation
by: Arunachalam, Easun, et al.
Published: (2023)
by: Arunachalam, Easun, et al.
Published: (2023)
Pairing interacting protein sequences using masked language modeling
by: Lupo, Umberto, et al.
Published: (2023)
by: Lupo, Umberto, et al.
Published: (2023)
Absolute Concentration Robustness of Non-Redundant Zero-One Networks with Conservation Laws
by: Si, Xinyi, et al.
Published: (2026)
by: Si, Xinyi, et al.
Published: (2026)
Routing functions for parameter space decomposition to describe stability landscapes of ecological models
by: Cummings, Joseph, et al.
Published: (2025)
by: Cummings, Joseph, et al.
Published: (2025)
Optimal Harvesting in Stream Networks: Maximizing Biomass and Yield
by: Nguyen, Tung D., et al.
Published: (2026)
by: Nguyen, Tung D., et al.
Published: (2026)
Reaction kinetics of membrane receptors: a spatial modeling approach
by: Cengiz, Anil, et al.
Published: (2025)
by: Cengiz, Anil, et al.
Published: (2025)
A Macroscopically Consistent Reactive Langevin Dynamics Model
by: Isaacson, Samuel A., et al.
Published: (2025)
by: Isaacson, Samuel A., et al.
Published: (2025)
Effects of diffusion and advection on predator prey dynamics in an advective patchy environment
by: Wang, Qi
Published: (2024)
by: Wang, Qi
Published: (2024)
Multi-scale species richness estimation with deep learning
by: Boussange, Victor, et al.
Published: (2025)
by: Boussange, Victor, et al.
Published: (2025)
External light schedules can induce nighttime sleep disruptions in a Homeostat-Circadian-Light Model for sleep in young children
by: Yao, Tianyong, et al.
Published: (2025)
by: Yao, Tianyong, et al.
Published: (2025)
Similar Items
-
An Efficient Algorithm for Exploring RNA Branching Conformations under the Nearest-Neighbor Thermodynamic Model
by: Poznanović, Svetlana, et al.
Published: (2025) -
Improving RNA secondary structure prediction via state inference with deep recurrent neural networks
by: Willmott, Devin, et al.
Published: (2019) -
Computation of Minimum Numbers of Tile and Bond-Edge Types for DNA Self-Assembly of Select Archimedean Graphs
by: Merrithew, Tabitha, et al.
Published: (2025) -
Counterions in RNA structure: Structural bioinformatics analysis to identify the role of Mg2+ ions in base pair formation
by: Adhikari, Swati, et al.
Published: (2024) -
A Standardized Benchmark for Machine-Learned Molecular Dynamics using Weighted Ensemble Sampling
by: Aghili, Alexander, et al.
Published: (2025)