Comprehensive Insights into the Cholesterol-Mediated Modulation of Membrane Function through Molecular Dynamics Simulations
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arXiv
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| Main Authors: | Khodadadi, Ehsaneh, Khodadadi, Ehsan, Chaturvedi, Parth, Moradi, Mahmoud |
|---|---|
| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | |
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