Advances in Surrogate Modeling for Biological Agent-Based Simulations: Trends, Challenges, and Future Prospects
Fuente:
arXiv
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| Main Authors: | Norton, Kerri-Ann, Bergman, Daniel, Jain, Harsh Vardhan, Jackson, Trachette |
|---|---|
| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | |
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