PhyloProfile v2: Scalable Exploration of Multilayered Phylogenetic Profiles via Dimensionality Reduction
Fuente:
arXiv
Saved in:
| Main Authors: | Tran, Vinh, Ebersberger, Ingo |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational Autoencoders
by: Xie, Tianyu, et al.
Published: (2025)
by: Xie, Tianyu, et al.
Published: (2025)
PhyloGFN: Phylogenetic inference with generative flow networks
by: Zhou, Mingyang, et al.
Published: (2023)
by: Zhou, Mingyang, et al.
Published: (2023)
PhyloFrame: A DataFrame-based Library for Fast, Flexible Phylogenetic Computation
by: Moreno, Matthew Andres, et al.
Published: (2026)
by: Moreno, Matthew Andres, et al.
Published: (2026)
PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation
by: Duan, ChenRui, et al.
Published: (2024)
by: Duan, ChenRui, et al.
Published: (2024)
From trees to traits: A review of advances in PhyloG2P methods and future directions
by: Macdonald, Arlie R., et al.
Published: (2025)
by: Macdonald, Arlie R., et al.
Published: (2025)
Phylo2Vec: a vector representation for binary trees
by: Penn, Matthew J, et al.
Published: (2023)
by: Penn, Matthew J, et al.
Published: (2023)
Daily Profile of COVID-19 Infections in Germany, throughout the Pandemic
by: Marsh, Derek
Published: (2025)
by: Marsh, Derek
Published: (2025)
Estimation of Phylogenetic Tree using Gene Sequencing Data
by: Rafiuddin, S M
Published: (2025)
by: Rafiuddin, S M
Published: (2025)
Group-Based Phylogenetic Models on 3-Sunlet Networks
by: Cox, Shelby, et al.
Published: (2024)
by: Cox, Shelby, et al.
Published: (2024)
PhyloLM : Inferring the Phylogeny of Large Language Models and Predicting their Performances in Benchmarks
by: Yax, Nicolas, et al.
Published: (2024)
by: Yax, Nicolas, et al.
Published: (2024)
ARTreeFormer: A Faster Attention-based Autoregressive Model for Phylogenetic Inference
by: Xie, Tianyu, et al.
Published: (2025)
by: Xie, Tianyu, et al.
Published: (2025)
Treemble: A Graphical Tool to Generate Newick Strings from Phylogenetic Tree Images
by: Allard, John B., et al.
Published: (2025)
by: Allard, John B., et al.
Published: (2025)
Order-Dependent Dissimilarity Measures on Phylogenetic Trees
by: Linz, Simone, et al.
Published: (2025)
by: Linz, Simone, et al.
Published: (2025)
Distinguishing Phylogenetic Level-2 Networks with Quartets and Inter-Taxon Quartet Distances
by: Holtgrefe, Niels, et al.
Published: (2025)
by: Holtgrefe, Niels, et al.
Published: (2025)
Unsupervised Learning of Phylogenetic Trees via Split-Weight Embedding
by: Kong, Yibo, et al.
Published: (2023)
by: Kong, Yibo, et al.
Published: (2023)
Bounds on the Treewidth of Level-k Rooted Phylogenetic Networks
by: Markin, Alexey, et al.
Published: (2024)
by: Markin, Alexey, et al.
Published: (2024)
Tropical Logistic Regression Model on Space of Phylogenetic Trees
by: Aliatimis, Georgios, et al.
Published: (2023)
by: Aliatimis, Georgios, et al.
Published: (2023)
Phylogenetic least squares estimation without genetic distances
by: Chi, Peter B., et al.
Published: (2023)
by: Chi, Peter B., et al.
Published: (2023)
Phylogenetic network classes through the lens of expanding covers
by: Francis, Andrew, et al.
Published: (2023)
by: Francis, Andrew, et al.
Published: (2023)
Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian
by: Bhatt, Samir, et al.
Published: (2025)
by: Bhatt, Samir, et al.
Published: (2025)
Metagenomic Analysis using Phylogenetic Placement -- A Review of the First Decade
by: Czech, Lucas, et al.
Published: (2022)
by: Czech, Lucas, et al.
Published: (2022)
The Cognate Data Bottleneck in Language Phylogenetics
by: Häuser, Luise, et al.
Published: (2025)
by: Häuser, Luise, et al.
Published: (2025)
Multivariate Aspects of Phylogenetic Comparative Methods
by: Bartoszek, Krzysztof
Published: (2024)
by: Bartoszek, Krzysztof
Published: (2024)
Statistics for Phylogenetic Trees in the Presence of Stickiness
by: Lammers, Lars, et al.
Published: (2024)
by: Lammers, Lars, et al.
Published: (2024)
Phylogenetic Tree Inference with Tropical Axial Attention
by: Teska, Chris, et al.
Published: (2026)
by: Teska, Chris, et al.
Published: (2026)
On the Approximation of Phylogenetic Distance Functions by Artificial Neural Networks
by: Rosenzweig, Benjamin K., et al.
Published: (2025)
by: Rosenzweig, Benjamin K., et al.
Published: (2025)
Computational and Experimental Exploration of Protein Fitness Landscapes: Navigating Smooth and Rugged Terrains
by: Sandhu, Mahakaran, et al.
Published: (2024)
by: Sandhu, Mahakaran, et al.
Published: (2024)
Bayesian Re-Analysis of the Phylogenetic Topology of Early SARS-CoV-2 Case Sequences
by: Weissman, Michael B.
Published: (2025)
by: Weissman, Michael B.
Published: (2025)
Cost-Effectiveness of Adult Hepatitis A Vaccination Strategies in Korea Under an Aging Susceptibility Profile
by: Lim, Yuna, et al.
Published: (2026)
by: Lim, Yuna, et al.
Published: (2026)
Inferring Phylogenetic Networks from Required and Forbidden LCA-Constraints
by: Ebert, Patricia A., et al.
Published: (2026)
by: Ebert, Patricia A., et al.
Published: (2026)
Evaluating Phylogenetic Comparative Methods under Reticulate Evolutionary Scenarios
by: Morley, Lydia, et al.
Published: (2026)
by: Morley, Lydia, et al.
Published: (2026)
Simplifying and Characterizing DAGs and Phylogenetic Networks via Least Common Ancestor Constraints
by: Lindeberg, Anna, et al.
Published: (2024)
by: Lindeberg, Anna, et al.
Published: (2024)
WebCVTree4: A Newly Designed Phylogenetic and Taxonomic Study Platform for Prokaryotes Using Composition Vectors and Whole Genomes
by: Zuo, Guanghong
Published: (2026)
by: Zuo, Guanghong
Published: (2026)
Phylogenetic network models as graphical models
by: Sullivant, Seth
Published: (2025)
by: Sullivant, Seth
Published: (2025)
Phylogenetic degrees for Jukes-Cantor model
by: Dinu, Rodica Andreea, et al.
Published: (2024)
by: Dinu, Rodica Andreea, et al.
Published: (2024)
Weighted Food Webs Make Computing Phylogenetic Diversity So Much Harder
by: Schestag, Jannik
Published: (2025)
by: Schestag, Jannik
Published: (2025)
Orthology and Near-Cographs in the Context of Phylogenetic Networks
by: Lindeberg, Anna, et al.
Published: (2025)
by: Lindeberg, Anna, et al.
Published: (2025)
CLTree: A Tool for Annotating, Rooting, and Evaluating Phylogenetic Trees Leveraging Genomic Lineages
by: Zuo, Guanghong
Published: (2025)
by: Zuo, Guanghong
Published: (2025)
SMDP: SARS-CoV-2 Mutation Distribution Profiler for rapid estimation of mutational histories of unusual lineages
by: Gill, Erin E., et al.
Published: (2024)
by: Gill, Erin E., et al.
Published: (2024)
Phylogenetic Corrections and Higher-Order Sequence Statistics in Protein Families: The Potts Model vs MSA Transformer
by: Khatri, Kisan, et al.
Published: (2025)
by: Khatri, Kisan, et al.
Published: (2025)
Similar Items
-
PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational Autoencoders
by: Xie, Tianyu, et al.
Published: (2025) -
PhyloGFN: Phylogenetic inference with generative flow networks
by: Zhou, Mingyang, et al.
Published: (2023) -
PhyloFrame: A DataFrame-based Library for Fast, Flexible Phylogenetic Computation
by: Moreno, Matthew Andres, et al.
Published: (2026) -
PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation
by: Duan, ChenRui, et al.
Published: (2024) -
From trees to traits: A review of advances in PhyloG2P methods and future directions
by: Macdonald, Arlie R., et al.
Published: (2025)