Saved in:
| Main Author: | Mukherjee, Saumyak |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | https://arxiv.org/abs/2504.20561 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Surface Induced Frustration of Inherent Dipolar Order in Nanoconfined Water
by: Mondal, Sayantan, et al.
Published: (2025)
by: Mondal, Sayantan, et al.
Published: (2025)
A Comprehensive System for Secondary Structure Analysis of Protein Models
by: Kannan, Vedh
Published: (2024)
by: Kannan, Vedh
Published: (2024)
A Comprehensive Review of Protein Language Models
by: Wang, Lei, et al.
Published: (2025)
by: Wang, Lei, et al.
Published: (2025)
Diffusion Sequence Models for Enhanced Protein Representation and Generation
by: Hallee, Logan, et al.
Published: (2025)
by: Hallee, Logan, et al.
Published: (2025)
Advances of Deep Learning in Protein Science: A Comprehensive Survey
by: Hu, Bozhen, et al.
Published: (2024)
by: Hu, Bozhen, et al.
Published: (2024)
SCOP: A Sequence-Structure Contrast-Aware Framework for Protein Function Prediction
by: Ma, Runze, et al.
Published: (2024)
by: Ma, Runze, et al.
Published: (2024)
STELLA: A Multimodal LLM for Protein Functional Annotation via Unified Sequence-Structure Encoding
by: Xiao, Hongwang, et al.
Published: (2025)
by: Xiao, Hongwang, et al.
Published: (2025)
Integrating Protein Sequence and Expression Level to Analysis Molecular Characterization of Breast Cancer Subtypes
by: Sholehrasa, Hossein, et al.
Published: (2024)
by: Sholehrasa, Hossein, et al.
Published: (2024)
Peptide Sequencing Via Protein Language Models
by: Pham, Thuong Le Hoai, et al.
Published: (2024)
by: Pham, Thuong Le Hoai, et al.
Published: (2024)
Bridging Classical Molecular Dynamics and Quantum Foundations for Comprehensive Protein Structural Analysis
by: Roosan, Don, et al.
Published: (2025)
by: Roosan, Don, et al.
Published: (2025)
MAP Format for Representing Chemical Modifications, Annotations, and Mutations in Protein Sequences: An Extension of the FASTA Format
by: Shendre, Akshay, et al.
Published: (2025)
by: Shendre, Akshay, et al.
Published: (2025)
Consistent Synthetic Sequences Unlock Structural Diversity in Fully Atomistic De Novo Protein Design
by: Reidenbach, Danny, et al.
Published: (2025)
by: Reidenbach, Danny, et al.
Published: (2025)
QMProt: A Comprehensive Dataset of Quantum Properties for Proteins
by: Sala, Laia Coronas, et al.
Published: (2025)
by: Sala, Laia Coronas, et al.
Published: (2025)
Importance Weighted Expectation-Maximization for Protein Sequence Design
by: Song, Zhenqiao, et al.
Published: (2023)
by: Song, Zhenqiao, et al.
Published: (2023)
MP2D: Constrained Monte Carlo Tree-Guided Diffusion for Multi-Objective Protein Sequence Design
by: Kong, Zitai, et al.
Published: (2026)
by: Kong, Zitai, et al.
Published: (2026)
Single-Sequence-Based Protein Secondary Structure Prediction using One-Hot and Chemical Encodings of Amino Acids
by: Trinh, Hoa, et al.
Published: (2024)
by: Trinh, Hoa, et al.
Published: (2024)
Tree Search-Based Evolutionary Bandits for Protein Sequence Optimization
by: Qiu, Jiahao, et al.
Published: (2024)
by: Qiu, Jiahao, et al.
Published: (2024)
Compact Artificial Neural Network Models for Predicting Protein Residue -- RNA Base Binding
by: Selitskiy, Stanislav
Published: (2025)
by: Selitskiy, Stanislav
Published: (2025)
Ligand-Conditioned Discrete Diffusion for Protein Sequence-Structure Co-Design
by: Wei, Chen, et al.
Published: (2026)
by: Wei, Chen, et al.
Published: (2026)
Frequency-Space Mechanics: A Sequence and Coordinate-Free Representation for Protein Function Prediction
by: Reilly, Charles B
Published: (2026)
by: Reilly, Charles B
Published: (2026)
Differential Effects of Sequence-Local versus Nonlocal Charge Patterns on Phase Separation and Conformational Dimensions of Polyampholytes as Model Intrinsically Disordered Proteins
by: Pal, Tanmoy, et al.
Published: (2024)
by: Pal, Tanmoy, et al.
Published: (2024)
Pseudo-perplexity in One Fell Swoop for Protein Fitness Estimation
by: Kantroo, Pranav, et al.
Published: (2024)
by: Kantroo, Pranav, et al.
Published: (2024)
Protein Representation Learning by Capturing Protein Sequence-Structure-Function Relationship
by: Ko, Eunji, et al.
Published: (2024)
by: Ko, Eunji, et al.
Published: (2024)
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone Generation
by: Huguet, Guillaume, et al.
Published: (2024)
by: Huguet, Guillaume, et al.
Published: (2024)
Beyond ESM2: Graph-Enhanced Protein Sequence Modeling with Efficient Clustering
by: Jiao, Shujian, et al.
Published: (2024)
by: Jiao, Shujian, et al.
Published: (2024)
Scoring-Assisted Generative Exploration for Proteins (SAGE-Prot): A Framework for Multi-Objective Protein Optimization via Iterative Sequence Generation and Evaluation
by: Lim, Hocheol, et al.
Published: (2025)
by: Lim, Hocheol, et al.
Published: (2025)
CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
by: Yang, Jason, et al.
Published: (2024)
by: Yang, Jason, et al.
Published: (2024)
Generative AI for Controllable Protein Sequence Design: A Survey
by: Zhu, Yiheng, et al.
Published: (2024)
by: Zhu, Yiheng, et al.
Published: (2024)
Protein FID: Improved Evaluation of Protein Structure Generative Models
by: Faltings, Felix, et al.
Published: (2025)
by: Faltings, Felix, et al.
Published: (2025)
Speak to a Protein: An Interactive Multimodal Co-Scientist for Protein Analysis
by: Navarro, Carles, et al.
Published: (2025)
by: Navarro, Carles, et al.
Published: (2025)
Fold-switching Proteins
by: Chakravarty, Devlina, et al.
Published: (2025)
by: Chakravarty, Devlina, et al.
Published: (2025)
A New Route for the Determination of Protein Structure and Function
by: Mejias, S. H., et al.
Published: (2024)
by: Mejias, S. H., et al.
Published: (2024)
Decoding How Proteins Fold
by: Vila, Jorge
Published: (2025)
by: Vila, Jorge
Published: (2025)
PLD-Tree: Persistent Laplacian Decision Tree for Protein-Protein Binding Free Energy Prediction
by: Xu, Xingjian, et al.
Published: (2024)
by: Xu, Xingjian, et al.
Published: (2024)
Improving Protein Sequence Design through Designability Preference Optimization
by: Xue, Fanglei, et al.
Published: (2025)
by: Xue, Fanglei, et al.
Published: (2025)
Reinforcement Learning for Sequence Design Leveraging Protein Language Models
by: Subramanian, Jithendaraa, et al.
Published: (2024)
by: Subramanian, Jithendaraa, et al.
Published: (2024)
TourSynbio: A Multi-Modal Large Model and Agent Framework to Bridge Text and Protein Sequences for Protein Engineering
by: Shen, Yiqing, et al.
Published: (2024)
by: Shen, Yiqing, et al.
Published: (2024)
Persistent Sheaf Laplacian Analysis of Protein Flexibility
by: Hayes, Nicole, et al.
Published: (2025)
by: Hayes, Nicole, et al.
Published: (2025)
Toward the Explainability of Protein Language Models
by: Hunklinger, Andrea, et al.
Published: (2025)
by: Hunklinger, Andrea, et al.
Published: (2025)
Topological Enhancement of Protein Kinetic Stability
by: Especial, João NC, et al.
Published: (2026)
by: Especial, João NC, et al.
Published: (2026)
Similar Items
-
Surface Induced Frustration of Inherent Dipolar Order in Nanoconfined Water
by: Mondal, Sayantan, et al.
Published: (2025) -
A Comprehensive System for Secondary Structure Analysis of Protein Models
by: Kannan, Vedh
Published: (2024) -
A Comprehensive Review of Protein Language Models
by: Wang, Lei, et al.
Published: (2025) -
Diffusion Sequence Models for Enhanced Protein Representation and Generation
by: Hallee, Logan, et al.
Published: (2025) -
Advances of Deep Learning in Protein Science: A Comprehensive Survey
by: Hu, Bozhen, et al.
Published: (2024)