Image de couverture de livre

Interpretable graph-based models on multimodal biomedical data integration: A technical review and benchmarking

Fuente: arXiv

Enregistré dans:

Détails bibliographiques
Auteurs principaux:	Sadeghi, Alireza, Hajati, Farshid, Argha, Ahmadreza, Lovell, Nigel H, Yang, Min, Alinejad-Rokny, Hamid
Format:	Preprint
Publié:	2025
Sujets:	Genomics Artificial Intelligence
Accès en ligne:	Acceder al recurso
Tags:	Ajouter un tag Pas de tags, Soyez le premier à ajouter un tag!

Documents similaires

SemanticST: Spatially Informed Semantic Graph Learning for Clustering, Integration, and Scalable Analysis of Spatial Transcriptomics
par: Zahedi, Roxana, et autres
Publié: (2025)

How chromatin interactions shed light on interpreting non-coding genomic variants: opportunities and future direc-tions
par: Liang, Yuheng, et autres
Publié: (2024)

Transcriptomic Models for Immunotherapy Response Prediction Show Limited Cross-cohort Generalisability
par: Liang, Yuheng, et autres
Publié: (2026)

Revolutionizing Genomics with Reinforcement Learning Techniques
par: Karami, Mohsen, et autres
Publié: (2023)

CLinNET: An Interpretable and Uncertainty‐Aware Deep Learning Framework for Multi‐Modal Clinical Genomics
par: Ivan Bakhshayeshi, et autres
Publié: (2026)

A benchmarking of genomic selection models for predicting grain‐yield related traits using haplotype‐based and genome‐wide association study‐based markers in rice
par: Xiankang Hu, et autres
Publié: (2026)

Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference
par: Fournier, Patrick, et autres
Publié: (2025)

Same model, better performance: the impact of shuffling on DNA Language Models benchmarking
par: Greco, Davide, et autres
Publié: (2025)

A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
par: Munteanu, Viorel, et autres
Publié: (2023)

RareCollab: an LLM-powered framework for multimodal reasoning in Mendelian disease diagnosis
par: Qi, Guantong, et autres
Publié: (2026)

From de Bruijn graphs to variation graphs-relationships between pangenome models
par: Cicherski, Adam, et autres
Publié: (2025)

A harmonized benchmarking framework for implementation-aware evaluation of 46 polygenic risk score tools across binary and continuous phenotypes
par: Muneeb, Muhammad, et autres
Publié: (2026)

DeeDeeExperiment: Building an infrastructure for integrating and managing omics data analysis results in R/Bioconductor
par: Abassi, Najla, et autres
Publié: (2025)

SpikGPT: A High-Accuracy and Interpretable Spiking Attention Framework for Single-Cell Annotation
par: Huang, Min, et autres
Publié: (2025)

Toward Interpretable and Generalizable AI in Regulatory Genomics
par: Nagai, Masayuki, et autres
Publié: (2026)

Enhancing named entity recognition with a novel BERT‐BiLSTM‐CRF‐RC joint training model for biomedical materials database
par: Mufei Li, et autres
Publié: (2025)

Hybrid kernels integrating genomic and multispectral data improve wheat genomic prediction accuracy
par: Osval A. Montesinos‐López, et autres
Publié: (2025)

Approaches for benchmarking single-cell gene regulatory network inference methods
par: Uzun, Yasin
Publié: (2023)

Exploring gene content with pangene graphs
par: Li, Heng, et autres
Publié: (2024)

LOCO-EPI: Leave-one-chromosome-out (LOCO) as a benchmarking paradigm for deep learning based prediction of enhancer-promoter interactions
par: Tahir, Muhammad, et autres
Publié: (2025)

Parameter-free representations outperform single-cell foundation models on downstream benchmarks
par: Souza, Huan, et autres
Publié: (2026)

Approaches to studying virus pangenome variation graphs
par: Downing, Tim
Publié: (2024)

ETAGE: Enhanced Test Time Adaptation with Integrated Entropy and Gradient Norms for Robust Model Performance
par: Shamsi, Afshar, et autres
Publié: (2024)

Disentangling shared and private latent factors in multimodal Variational Autoencoders
par: Märtens, Kaspar, et autres
Publié: (2024)

Enhancing genomic‐based forward prediction accuracy in wheat by integrating UAV‐derived hyperspectral and environmental data with machine learning under heat‐stressed environments
par: Jordan McBreen, et autres
Publié: (2025)

AnnotateMissense: a genome-wide annotation and benchmarking framework for missense pathogenicity prediction
par: Muneeb, Muhammad, et autres
Publié: (2026)

An algorithm to align a chain of sequences to paths in a pangenome graph
par: Solun, Gorkem Kadir, et autres
Publié: (2025)

LCPan: efficient variation graph construction using Locally Consistent Parsing
par: Ashyralyyev, Akmuhammet, et autres
Publié: (2025)

deepFEPS: Deep Learning-Oriented Feature Extraction for Biological Sequences
par: Ismail, Hamid, et autres
Publié: (2025)

NucEL: Single-Nucleotide ELECTRA-Style Genomic Pre-training for Efficient and Interpretable Representations
par: Ding, Ke, et autres
Publié: (2025)

A knowledge graph attention network for the cold‐start problem in intelligent manufacturing: Interpretability and accuracy improvement
par: Ziye Zhou, et autres
Publié: (2025)

Tutorial on survival modeling with applications to omics data
par: Zhao, Zhi, et autres
Publié: (2023)

A review on the applications of graph neural networks in materials science at the atomic scale
par: Xingyue Shi, et autres
Publié: (2024)

CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
par: Consortium, The Critical Assessment of Genome Interpretation
Publié: (2022)

RxSafeBench: Identifying Medication Safety Issues of Large Language Models in Simulated Consultation
par: Zhao, Jiahao, et autres
Publié: (2025)

PyamilySeq: A Python Tool for Interpretable Gene (Re)Clustering and Pangenomic Inference Across Species and Genera
par: Dimonaco, Nicholas J.
Publié: (2024)

ShortCake: An integrated platform for efficient and reproducible single-cell analysis
par: Nakato, Ryuichiro, et autres
Publié: (2025)

Computational approaches for virus host prediction: A review of methods and applications
par: Shang, Jiayu, et autres
Publié: (2025)

A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
par: Davies, Billie E, et autres
Publié: (2026)

A selective review of recent developments in spatially variable gene detection for spatial transcriptomics
par: Adhikari, Sikta Das, et autres
Publié: (2023)