Image de couverture de livre

GRAPE: Heterogeneous Graph Representation Learning for Genetic Perturbation with Coding and Non-Coding Biotype

Fuente: arXiv

Enregistré dans:

Détails bibliographiques
Auteurs principaux:	Chi, Changxi, Xia, Jun, Zhou, Jingbo, Cheng, Jiabei, Yu, Chang, Li, Stan Z.
Format:	Preprint
Publié:	2025
Sujets:	Quantitative Methods Artificial Intelligence Machine Learning Genomics
Accès en ligne:	Acceder al recurso
Tags:	Ajouter un tag Pas de tags, Soyez le premier à ajouter un tag!

Documents similaires

StateXDiff: Cell State-Contextualized Multimodal Diffusion for Single-Cell Perturbation Prediction
par: Shi, Peiting, et autres
Publié: (2026)

PRESCRIBE: Predicting Single-Cell Responses with Bayesian Estimation
par: Cheng, Jiabei, et autres
Publié: (2025)

DNA Language Model and Interpretable Graph Neural Network Identify Genes and Pathways Involved in Rare Diseases
par: Saadat, Ali, et autres
Publié: (2024)

The Multivariate SEM-PGS Model: Using Polygenic Scores to Investigate Cross-Trait Genetic Nurture and Assortative Mating
par: Lyu, Xuanyu, et autres
Publié: (2025)

From Syntax to Semantics: Geometric Stability as the Missing Axis of Perturbation Biology
par: Raju, Prashant C.
Publié: (2026)

pHapCompass: Probabilistic Assembly and Uncertainty Quantification of Polyploid Haplotype Phase
par: Hosseini, Marjan, et autres
Publié: (2025)

Fine-tuning the ESM2 protein language model to understand the functional impact of missense variants
par: Saadat, Ali, et autres
Publié: (2024)

MotifbreakR v2: extended capability and database integration
par: Coetzee, Simon G., et autres
Publié: (2024)

Methylation Operation Wizard (MeOW): Identification of differentially methylated regions in long-read sequencing data
par: Zalusky, Miranda PG, et autres
Publié: (2024)

Deciphering regulatory architectures from synthetic single-cell expression patterns
par: Pan, Rosalind Wenshan, et autres
Publié: (2024)

Objectively Evaluating the Reliability of Cell Type Annotation Using LLM-Based Strategies
par: Ye, Wenjin, et autres
Publié: (2024)

Proteome-wide prediction of mode of inheritance and molecular mechanism underlying genetic diseases using structural interactomics
par: Saadat, Ali, et autres
Publié: (2024)

RawHash2: Mapping Raw Nanopore Signals Using Hash-Based Seeding and Adaptive Quantization
par: Firtina, Can, et autres
Publié: (2023)

RawAlign: Accurate, Fast, and Scalable Raw Nanopore Signal Mapping via Combining Seeding and Alignment
par: Lindegger, Joël, et autres
Publié: (2023)

DiMA: Sequence Diversity Dynamics Analyser for Viruses
par: Tharanga, Shan, et autres
Publié: (2022)

CIBRA identifies genomic alterations with a system-wide impact on tumor biology
par: Lakbir, Soufyan, et autres
Publié: (2024)

CEP-IP: An Explainable Framework for Cell Subpopulation Identification in Single-cell Transcriptomics
par: Wong, Kah Keng
Publié: (2025)

A CNN Approach to Polygenic Risk Prediction of Kidney Stone Formation
par: Salem, Amr, et autres
Publié: (2024)

Lightning-fast adaptive immune receptor similarity search by symmetric deletion lookup
par: Chotisorayuth, Touchchai, et autres
Publié: (2024)

Harnessing the Potential of Spatial Statistics for Spatial Omics Data with pasta
par: Emons, Martin, et autres
Publié: (2024)

Viral Dark Matter: Illuminating Protein Function, Ecology, and Biotechnological Promises
par: Kosmopoulos, James C., et autres
Publié: (2025)

SpikGPT: A High-Accuracy and Interpretable Spiking Attention Framework for Single-Cell Annotation
par: Huang, Min, et autres
Publié: (2025)

Refined HLA Linkage Disequilibrium Architectures of World Populations by a Novel Allelic Correlation Measure
par: Zhang, Fei, et autres
Publié: (2025)

Single-Cell Proteomics Using Mass Spectrometry
par: Momenzadeh, Amanda, et autres
Publié: (2025)

Phospho-Proteomics Method Optimization and Application to Stimulated Jurkat Cells
par: Ndungu, Teresia, et autres
Publié: (2025)

Sweetwater: An interpretable and adaptive autoencoder for efficient tissue deconvolution
par: de la Fuente, Jesus, et autres
Publié: (2023)

Microbial and Viral Ecology Analysis for Metagenomic Data
par: Kosmopoulos, James C., et autres
Publié: (2024)

RawBench: A Comprehensive Benchmarking Framework for Raw Nanopore Signal Analysis Techniques
par: Eris, Furkan, et autres
Publié: (2025)

A Bayesian approach to model uncertainty in single-cell genomic data
par: Ren, Shanshan, et autres
Publié: (2025)

Pathway Tools version 28.0: Integrated Software for Pathway/Genome Informatics and Systems Biology
par: Karp, Peter D., et autres
Publié: (2015)

From Mutation to Degradation: Predicting Nonsense-Mediated Decay with NMDEP
par: Saadat, Ali, et autres
Publié: (2025)

MetaCompass: Reference-guided Assembly of Metagenomes
par: Luan, Tu, et autres
Publié: (2024)

A comprehensive comparison of tools for fitting mutational signatures
par: Medo, Matúš, et autres
Publié: (2023)

Multimodal Spatial Omics: From Data Acquisition to Computational Integration
par: Isik, Esra Busra, et autres
Publié: (2026)

Lingshu-Cell: A generative cellular world model for transcriptome modeling toward virtual cells
par: Zhang, Han, et autres
Publié: (2026)

MARADONER: Motif Activity Response Analysis Done Right
par: Meshcheryakov, Georgy, et autres
Publié: (2026)

Double trouble: Predicting new variant counts across two heterogeneous populations
par: Shen, Yunyi, et autres
Publié: (2024)

High nucleotide skew palindromic DNA sequences function as replication origins due to their unzipping propensity
par: Sahu, Parthasarathi, et autres
Publié: (2024)

Learning Genomic Structure from $k$-mers
par: Thor, Filip, et autres
Publié: (2025)

Simultaneously Infer Cell Pseudotime,Velocity Field and Gene Interaction from Multi-Branch scRNA-seq Data with scPN
par: Zhou, Zhen, et autres
Publié: (2024)