Saved in:
| Main Authors: | Iyengar, Seshu, Hilfinger, Andreas |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | https://arxiv.org/abs/2505.04912 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Inferring gene regulation dynamics from static snapshots of gene expression variability
by: Joly-Smith, Euan, et al.
Published: (2021)
by: Joly-Smith, Euan, et al.
Published: (2021)
Using stationary information flows to prove kinetic uncertainty relations in biochemical control systems
by: Ripsman, Ryan, et al.
Published: (2025)
by: Ripsman, Ryan, et al.
Published: (2025)
Efficiency-fluctuation trade-offs in biomolecular assembly processes
by: Kell, Brayden, et al.
Published: (2024)
by: Kell, Brayden, et al.
Published: (2024)
Non-Markovian gene expression
by: Vilk, Ohad, et al.
Published: (2023)
by: Vilk, Ohad, et al.
Published: (2023)
Multicellular control of gene networks
by: Allison, Kyle R.
Published: (2025)
by: Allison, Kyle R.
Published: (2025)
The CausalBench challenge: A machine learning contest for gene network inference from single-cell perturbation data
by: Chevalley, Mathieu, et al.
Published: (2023)
by: Chevalley, Mathieu, et al.
Published: (2023)
Approaches for benchmarking single-cell gene regulatory network inference methods
by: Uzun, Yasin
Published: (2023)
by: Uzun, Yasin
Published: (2023)
A control theoretical approach to gene regulation raises quantitative constraints for dynamic homeostasis in stochastic gene expression
by: Giovanini, Guilherme, et al.
Published: (2025)
by: Giovanini, Guilherme, et al.
Published: (2025)
Near-critical gene expression in embryonic boundary precision
by: Vennettilli, Michael, et al.
Published: (2025)
by: Vennettilli, Michael, et al.
Published: (2025)
Predicting the genetic component of gene expression using gene regulatory networks
by: Mohammad, Gutama Ibrahim, et al.
Published: (2024)
by: Mohammad, Gutama Ibrahim, et al.
Published: (2024)
Maximum entropy models for patterns of gene expression
by: Sarra, Camilla, et al.
Published: (2024)
by: Sarra, Camilla, et al.
Published: (2024)
Practical indistinguishability in a gene regulatory network inference problem, a case study
by: FitzGerald, Cody E., et al.
Published: (2025)
by: FitzGerald, Cody E., et al.
Published: (2025)
Scalable vertex guided filtrations identify structurally relevant genes in cancer networks
by: Viana, Edmara, et al.
Published: (2026)
by: Viana, Edmara, et al.
Published: (2026)
Identifying the sources of noise synergy and redundancy in the gene expression of feed-forward loop motif
by: Nandi, Mintu, et al.
Published: (2025)
by: Nandi, Mintu, et al.
Published: (2025)
Evaluation of network-guided random forest for disease gene discovery
by: Hu, Jianchang, et al.
Published: (2023)
by: Hu, Jianchang, et al.
Published: (2023)
TwinPurify: Purifying gene expression data to reveal tumor-intrinsic transcriptional programs via self-supervised learning
by: Zheng, Zhiwei, et al.
Published: (2026)
by: Zheng, Zhiwei, et al.
Published: (2026)
Synthetic frequency-controlled gene circuits unlock expanded cellular states
by: Zhang, Rongrong, et al.
Published: (2024)
by: Zhang, Rongrong, et al.
Published: (2024)
Hybridization and gene expression: Beyond differentially expressed genes
by: Anna Runemark, et al.
Published: (2024)
by: Anna Runemark, et al.
Published: (2024)
GCnet: Using Granger causality to explore the dynamic causality relations among genes as-sociated with intellectual disability in human brain
by: Brandt, Lukas Madsen, et al.
Published: (2025)
by: Brandt, Lukas Madsen, et al.
Published: (2025)
Parsimonious computational inference protocol for Boolean networks: Application to osteogenesis
by: Demongeot, Jacques, et al.
Published: (2026)
by: Demongeot, Jacques, et al.
Published: (2026)
Genetic studies through the lens of gene networks
by: Subirana-Granés, Marc, et al.
Published: (2024)
by: Subirana-Granés, Marc, et al.
Published: (2024)
Local imperfect feedback control in non-equilibrium biophysical systems enabled by thermodynamic constraints
by: Floyd, Carlos, et al.
Published: (2025)
by: Floyd, Carlos, et al.
Published: (2025)
Control of genes by self-organizing multicellular interaction networks
by: Allison, Kyle R.
Published: (2026)
by: Allison, Kyle R.
Published: (2026)
Analysis of a detailed multi-stage model of stochastic gene expression using queueing theory and model reduction
by: Ma, Muhan, et al.
Published: (2024)
by: Ma, Muhan, et al.
Published: (2024)
Exact analytic expressions for discrete first-passage time probability distributions in Markov networks
by: Albert, Jaroslav
Published: (2024)
by: Albert, Jaroslav
Published: (2024)
Incorporating stochastic gene expression, signaling-mediated intercellular interactions, and regulated cell proliferation in models of coordinated tissue development
by: Barkan, Casey O., et al.
Published: (2025)
by: Barkan, Casey O., et al.
Published: (2025)
Efficient Shapley values computation for Boolean network models of gene regulation
by: Pham, Giang, et al.
Published: (2026)
by: Pham, Giang, et al.
Published: (2026)
Negative feedback and oscillations in a model for mRNA translation
by: Ehrman, Aliza, et al.
Published: (2025)
by: Ehrman, Aliza, et al.
Published: (2025)
The gene function prediction challenge: large language models and knowledge graphs to the rescue
by: Sunil, Rohan Shawn, et al.
Published: (2024)
by: Sunil, Rohan Shawn, et al.
Published: (2024)
Epigenetic feedback reshapes dynamical landscapes in gene regulatory networks
by: Hauck, Sascha H., et al.
Published: (2025)
by: Hauck, Sascha H., et al.
Published: (2025)
Quantitative ergodicity for gene regulatory networks with transcriptional bursting
by: Gaillard, Mathilde, et al.
Published: (2026)
by: Gaillard, Mathilde, et al.
Published: (2026)
Modelling the effects of biological intervention in a dynamical gene network
by: Champagnat, Nicolas, et al.
Published: (2025)
by: Champagnat, Nicolas, et al.
Published: (2025)
Stable developmental patterns of gene expression without morphogen gradients
by: Majka, Maciej, et al.
Published: (2023)
by: Majka, Maciej, et al.
Published: (2023)
Landscapes and nonequilibrium fluctuations of eukaryotic gene regulation
by: Sasai, Masaki, et al.
Published: (2025)
by: Sasai, Masaki, et al.
Published: (2025)
Bacterial chromatin proteins, transcription, and DNA topology: Inseparable partners in the control of gene expression
by: Christine M. Hustmyer, et al.
Published: (2024)
by: Christine M. Hustmyer, et al.
Published: (2024)
Modular control of Boolean network models
by: Murrugarra, David, et al.
Published: (2024)
by: Murrugarra, David, et al.
Published: (2024)
Efficient stochastic simulation of gene regulatory networks using hybrid models of transcriptional bursting
by: Gaillard, Mathilde, et al.
Published: (2025)
by: Gaillard, Mathilde, et al.
Published: (2025)
Fast decisions with biophysically constrained gene promoter architectures
by: Tohme, Tarek, et al.
Published: (2025)
by: Tohme, Tarek, et al.
Published: (2025)
When many noisy genes optimize information flow
by: Lawson, Nicholas, et al.
Published: (2025)
by: Lawson, Nicholas, et al.
Published: (2025)
Bridging spatial and temporal scales of developmental gene regulation
by: Cardona, Andrés H., et al.
Published: (2025)
by: Cardona, Andrés H., et al.
Published: (2025)
Similar Items
-
Inferring gene regulation dynamics from static snapshots of gene expression variability
by: Joly-Smith, Euan, et al.
Published: (2021) -
Using stationary information flows to prove kinetic uncertainty relations in biochemical control systems
by: Ripsman, Ryan, et al.
Published: (2025) -
Efficiency-fluctuation trade-offs in biomolecular assembly processes
by: Kell, Brayden, et al.
Published: (2024) -
Non-Markovian gene expression
by: Vilk, Ohad, et al.
Published: (2023) -
Multicellular control of gene networks
by: Allison, Kyle R.
Published: (2025)